Cyprinus carpio (common carp): 109067363
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Entry
109067363 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109067363
Transcription factors [BR:
ccar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109067363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
109067363
NCBI-ProteinID:
XP_018939867
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Position
7:complement(6282613..6602526)
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AA seq
749 aa
AA seq
DB search
MSSKRPASPYGXDGEVVMATSRQRLEDEEVDGHAVIHLPLSTYCSKVSPRSPRLLDSPPT
LHANMDQDGSKGLALSPYPQHNSSTSPSKQQQQQEEGSMRPGSEPSSASALGTPERRKGS
LADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFGEIKGTQDSLVEK
ERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQ
QHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNYKPGCSDPYPL
QLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQANLATGTLSPTSGQ
SEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPTSPQVPALKLGPGSLKHSAPSSI
GGPPSRLSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKREQQVLDAKVAAVNSLS
LNNGRSEKDKAALESLSQQLKQSEESKFTHAMMDFGISGDSDGSPSVSDSRIFRDSRGRG
SSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQA
RLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEIRQYFTVGQQAQLPL
SSAGVVYSGALSMAGMPSPQMPSEHSSMSSSPEPVPPISHASYLTHKGEEPRVKEELRMN
DGNGDAYDDFDYEDDDGDYGSDSENHITQ
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcgaccagcctctccatacggannagatggagaggtagtcatggcgacg
agcagacagcgattggaggatgaagaggttgacggacatgctgtcattcacttgcccctc
agtacgtactgcagcaaagtgtccccgcgatctccgcgactgctcgacagccccccaaca
ctacatgcgaacatggatcaggatggcagtaaaggcctggccctgagcccctacccccag
cacaactcttctacctcacccagtaagcagcagcagcagcaggaggaggggtccatgcgg
ccggggagcgaacccagctccgcttcagctctgggcaccccggagagacgcaagggcagc
ctggccgacgtggtcgacacgctcaaacagcgcaagatggaggagctcatcaagaacgag
ccagaggaggcccccagtattgaaaggctgttgtctaaggactggaaggacaagctattg
gccatgggttctggcaactttggagagatcaaaggcacccaggacagcctggtggagaaa
gagcgccagctgatggggatgatcacgcaactcagcagtctcagagagcagctactggcc
gcccatgaggagcagaaaaaactggccgcttcgcagatcgaaaaacagcgccaacaaatg
gagttagcgaaacagcaacaggaccagattgcacgacaacagcagcaacttctgcagcaa
caacacaaaatcaacctcctgcagcaacagatccagcaggtccagggtcagttgcctcca
ctgatgatacctgtgttccctccagatcagagaactctggcggccgctgcagcacaacaa
ggatttctacttcctccagggttcaactacaaacctggctgcagtgacccttacccttta
cagctaatccctacgactatggcagcggctgctgcagcgacgcctggcctcggccctctt
caactgcagcagttgtatgcagctcagctagctgccatgcaggtgtctccgggggccaaa
cacagcacagtgcctcaggccaacctggcaaccggaacactctcgcccaccagcggccag
agtgagaaaaacagaagcaccccgccaccaaagcccaaggacgagggcgctcagcccttg
aatctgtcgtccaagcctaaggcatccgagagcaagtcacccacctcccccacttcccca
caggtccctgccctgaagctgggccccgggtccctgaagcacagcgccccctccagcatt
ggaggaccgccgtccagactcagctccatagacctgctgtcatccatcacttccggcggc
tacctgaacgaccatgaggccgtgaccaaagctttccaggaggctcgacagatgaaggag
cagctaaagagagaacagcaggttttggacgccaaagtagcggcagtcaacagcctgagc
ctcaacaacggtcgatcagaaaaggataaagccgctcttgaaagcctgagccaacagtta
aaacagtctgaagagagcaagtttactcacgcaatgatggactttggtatcagtggcgat
tcagatggaagcccgagtgtgtcagactcccggatctttcgagattctcgagggcgtggc
agcagcgaaccacacatcaagcggcccatgaacgcctttatggtctgggctaaagacgag
aggaggaagatccttcaggccttccctgacatgcataactcaaacatcagcaagatcctc
ggttctcgttggaagtccatgacaaacctggaaaagcagccatactatgaagaacaggcc
cgtcttagtaagcaacacctagagaaatatccagactacaaatacaaaccacggcccaaa
cgcacatgcctagtggacggaaagaaattgcgcattggtgaatataaggccatcatgcgc
aaccgcagacaggaaatacgccagtacttcaccgtagggcagcaggcccagttgcccttg
tcctcagcaggcgttgtgtactcaggcgcgctctctatggcaggaatgccctctccacag
atgccctctgagcactcgagcatgtctagtagccccgaaccagtcccacccatcagccat
gcctcttacctcacacacaagggggaggagcctcgtgtgaaggaggagctccgaatgaat
gacggcaatggtgacgcctacgatgacttcgactacgaagacgacgatggggactatggc
agtgacagcgagaatcacattactcagtaa
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