Cyprinus carpio (common carp): 109068824
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Entry
109068824 CDS
T05134
Symbol
pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccar03009
]
109068824 (pdcd11)
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
90S particles
Other 90S particles
109068824 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
OB_RRP5
DUF2110
Motif
Other DBs
NCBI-GeneID:
109068824
NCBI-ProteinID:
XP_042617521
Ensembl:
ENSCCRG00000037943
UniProt:
A0A9Q9YC79
LinkDB
All DBs
Position
A1:30403962..30423774
Genome browser
AA seq
1813 aa
AA seq
DB search
MATMEEDFPRGGTEKKTTESKNVKAHEVDNLFETRETVVTKKRKVVQQDGKQKTKQQKVE
REDLKLNTAATVEILHLRNLKIGTLMLGCVKEVSDFEAVVGFPSGLVGYLPICNICDSYT
SILKDNLDSEDSLKEVVPLSQLLTPGMLIRCVVSSLDSIKEGHTSLKVSINPKGVNKVLS
AASLKPGMTLSGCVESVEDHGFLVDIGISGTKAFLPKQSTSSKKDLNVGQYMTVLIEEVK
NDGRVVRLSQDPQALGKACAETQQGWTLDTLLPGLLIQARIKRVTPHGLIVTYLSSFTGM
VDFLHLDEDKASTYNTGDEVLARVLYVEPSTRHVGLSLRSHLLPPGGAVLDDISSERVSE
VVQGCKMSALHYHSGALMKMPDGTTVFVHKNLTKEASEEFNPNRLLTQPEHSLRIIDYSP
MERMHMGTLRRSTVNTELFRYQDVKVGQIVEGTVMDLQKHGAYVRITNHIKGLIPIIHLA
DVVLKNPEKIFTSGLKVKCRVLSVDAQQKKLCLTRKKALVESTLPLFLSYADAKVGRISH
GFIVCVKDFGCIVRFYEDVKGLVPKAELSTEHVTNPEALFFAGQVVKAKVLDCDEEKKML
RLSFRAVTEGDVKEAQTAKFDFVVGKTVEVKVCRKVLDGLEVSIVPEEVPAFIPTVHLSD
HVTNCLPLWMVLEEGDTISNLMCLSKKKKGITLTKKPLLKACLEDDSIPKNFSELQVGMQ
MVGWVKNIMPYGVFVDFPYELFGLAPKAAMGDQFITDTSTVFDIGQTVVAKVTNLDEEKN
RFLVSLRVSELSLSGEGSQARLIQGLKERKAIFEMMTCRGESDVLQQLSAVSLGNKLKVT
VGDNREDGSVALTSDQLSEATVLVSKYHTEGVNVSPGCKLTAVVLHVDLSKSEVHVSLLP
KLTAATRKKLEKDSKLTATIQYTDKDFAVVSLGDSGHLTIIPTRTHINDILNSKKFHVGS
CLNVTVEEPSSEELGGLPLVECQKQNATRETQKQEQSKSKSTGLGEVMTVTVKKVKPMDV
VVILPSGTTGSIHVSQIEEKPAVGSFPTSSLKVGSKVEARVIGALTVHGHKFLPISHPDF
KVSLPELTLLPSKLNDADKKAIDKLSYKPGDEVICFASKFDKESQCLEVHVKPNVMGTVE
LLAMINKPSQANHPQTLFKLGQTISAKVVGLGTSKPFRLSLSLTGMYKLEQGVITMAKVR
KIVPHMGLFLQLPFGNSGLASVTDLSDEFTDNPLESYKLGQLVRCCVIGEENENFNISLR
PSRLYKDHNKNLTDPDIQSISDIKEGQIIRGYLMSVTDLGIFVRLSRTISGRVLFQNATK
YFVNNQKTFSEHISSNALLTAKVLSVNSKNEHVSLSLLSKDTGKPDLLPESLELPLRLTK
EEMQERDKKATKRKRVNSESQQQDDEKNGQTIKKKKEGPVKGKSKEKKKTIKERTKTEDN
DSGVEVFFREEEVTPLRKNQVQVKGKPEAKEPERLKVAFGFPWESTLCSLTPFAAVDDTH
DSSEDEQEVKSKPMKKSRKELKQEQQNAEQQLSKLEAELMDTSVRPDSTVAFERLLLSSP
DSSLLWLQYMAFHLQATQIEQARAVGERALKTISFREEQEKLNVWVAILNLENMYGTQES
LQKVFERAIQYCEPLPVYQQLADIYAKSDKIKEAESLYKSMVKRFKQEKAVYLSYGNFLL
RQHQSDAANALLQRALQSLSNKEHVDLIVKFARLEFQYGNAERAXMFNKVLSTYPKRTDL
WSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKLLEYEKKNGTPETIQAVKQKA
LGYVESKGAETAS
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggcgactatggaggaagattttccccgtggtgggacagagaagaagaccaccgagtcc
aaaaatgttaaggcacatgaagtggacaatctttttgaaacacgtgaaacagtggtcacg
aagaagagaaaggtcgtgcaacaggatggaaagcaaaaaactaagcaacaaaaagtggaa
agagaggatttaaagcttaatactgccgccactgtggaaattcttcatttacggaatctg
aagattggcactctgatgctgggctgtgtgaaggaagtgtcagactttgaggcagtagtt
ggttttcccagcggtcttgttggttacctgccaatctgcaacatttgtgactcctatacc
agtattcttaaggacaacctggactctgaagacagcttaaaggaagttgttccactatca
caactgcttactcctggaatgctgatcagatgcgttgtctcgtctctcgactccattaag
gagggtcatactagtcttaaagtgtcaatcaaccctaaaggggttaacaaggtgttgagt
gcagcttccttgaaacctggaatgacactgagtggttgtgtggagagtgtggaagatcac
ggcttcctggtcgacatcggaatcagtggcactaaagcgttcctgcccaaacaaagcaca
tcctcaaaaaaagatctgaatgtgggtcagtacatgacggtcctgatagaggaagtcaag
aacgatgggcgtgtggtgcgtctgtcccaggatccccaggctcttggaaaggcctgtgca
gagactcagcaaggatggactctagacacgctcctgccgggacttctgatccaggcacgc
atcaagagggttactcctcatgggcttattgtgacgtatctttcatcttttactggaatg
gttgattttctgcaccttgatgaggacaaagcatctacctacaacacaggagatgaggtc
ctggcgcgggttctgtatgtggagccatccacgcggcatgtgggtctgtccctgcgcagt
catctcctgccaccaggtggcgctgtgctggatgacatctcgagtgagcgggtgagtgag
gtggtgcagggctgtaagatgtctgctttgcactaccactctggagccttgatgaagatg
cctgacgggaccacagtctttgtgcataaaaacctcacgaaggaggcaagtgaagaattc
aacccaaaccgcttgctgacccagcctgaacacagtctgagaatcatagattacagtcct
atggaacgaatgcacatgggcacactgcgcaggagcactgttaatacagagttgttcaga
tatcaagatgtcaaagtgggacaaattgttgagggaacagttatggatttgcagaaacat
ggtgcttacgtgaggataacgaaccacatcaaaggattgatacccataattcacctggcc
gatgttgtcttaaagaacccagagaagatattcactagtggactgaaggtcaagtgcagg
gtgttgtcagtggacgctcagcagaagaagttgtgcctgaccaggaagaaggcccttgtt
gagtccacactccctctcttcctgtcctacgctgatgccaaggtgggccgcatctcccac
ggcttcatcgtgtgtgtgaaggactttggctgcattgttcgtttctacgaagatgtgaag
ggtctggttcctaaggcggaactgtccacagagcatgtgactaatccagaagcgctcttc
ttcgctggccaggttgtcaaggccaaagtcttggattgtgatgaagaaaaaaagatgcta
cgtttatccttcagggccgttactgagggagacgtaaaagaggcacagactgccaaattt
gactttgtggttggaaagacggttgaagtaaaagtgtgccgcaaagtcctggatggtctg
gaggtctccattgttcctgaggaggtgccagctttcatacccacagtgcacctctctgac
cacgtgaccaactgccttccactctggatggtgctggaggagggcgacaccatctctaat
ttaatgtgtctcagcaagaagaagaagggcattactctcactaagaaacccctgctgaag
gcttgtctggaggacgacagcattcccaaaaacttctctgagctccaggtggggatgcag
atggtcggctgggtgaaaaacatcatgccttatggagtcttcgtcgatttcccgtatgaa
ctcttcggcctcgctcctaaagctgccatgggcgatcagttcatcacagacacctcaacc
gtctttgacatcggccagacggttgttgccaaagtcaccaatttggatgaagagaagaac
aggtttctggtcagtctgagggtgtcagaattgagtctctcaggggaagggtcccaagcc
agactgatccagggtctgaaggaaaggaaggccatctttgagatgatgacttgcagaggc
gagtctgacgtcctgcagcagctctctgctgtatctctcggaaataaactgaaggtgacg
gtgggagataaccgagaggatggctcggtcgcactgacctcagatcagctcagtgaagcc
actgtattggtctctaagtaccacacagaaggtgtgaatgtgagtccaggctgcaaactc
actgcagtggtcctccatgtcgacctttcgaagtctgaggtccatgtgtcgctgcttcca
aagctgaccgcggcgacgaggaaaaagttggaaaaggactccaaactcactgccacgatc
cagtacacagacaaagactttgctgtcgtctcattgggtgactctggtcacctgaccatc
attcccactcgcactcacataaatgacatattaaattcaaagaaatttcacgttggttcc
tgtctgaatgtgactgtggaggagcccagcagcgaggagttgggaggacttcctcttgtc
gagtgtcagaaacagaacgccacgagagaaacgcagaaacaggagcagagcaaatctaag
agcacaggtcttggggaagtgatgacagtgacggtaaagaaggtgaagcccatggatgtg
gtggtgatactgccatcagggaccacaggaagtatccatgtatctcagatcgaggagaaa
ccagcggttggcagcttcccaacatcatccctgaaggtcgggagcaaggtcgaagccaga
gtgattggagcgctaacagttcatggtcacaagttcctgccaatctctcatcccgacttt
aaggtttcccttcctgaactcactcttctgcccagcaaactgaatgatgctgacaagaag
gcgattgacaaattgagctacaaacctggagatgaagtcatatgctttgcatcaaagttc
gacaaagaatcacaatgcttagaagtccatgtgaagcccaacgtcatgggaacggttgaa
ctgttagccatgattaacaaacctagccaagctaatcacccacagacgctttttaaactg
ggacagactatttctgcaaaggttgttggtcttggtaccagcaaaccttttcgtctttcg
ctttcactcacagggatgtacaagctggagcaaggggtgatcaccatggcgaaggttcgg
aaaattgtgcctcacatgggactatttctccaactcccatttgggaattcgggtttggct
tcggtaacggatctctctgatgaattcacagacaacccgctagagtcctacaagctgggc
caactagtccggtgctgcgttattggggaggaaaatgaaaacttcaacatatcattacgt
ccctccagattgtataaggaccacaataagaatcttacagatccagacattcagtcaatt
tccgatataaaagagggccagattatcaggggatatttgatgtctgttaccgatctaggc
atatttgtgaggttatcaaggaccatctcaggcagagttcttttccagaatgctacaaaa
tactttgtgaacaaccaaaaaacgttttccgaacacatttcctcgaatgcattgctgaca
gccaaggtcctcagtgtgaactccaagaacgagcatgtgagcctgtcactgctgtcaaag
gacactggcaaaccagatctgctcccagaatcccttgagcttccattgcgtttgacaaaa
gaggagatgcaagaacgtgacaagaaagccaccaagaggaagcgggttaattctgagagc
cagcaacaagacgatgagaaaaatggacagacgattaaaaagaaaaaagaaggcccagta
aagggcaaatccaaagaaaagaagaaaacaataaaagagagaactaaaactgaggataat
gacagtggtgtagaagtgttcttcagagaggaggaagtaacgccgttgcgtaaaaatcaa
gtccaagtaaagggtaagccagaggcaaaggaaccagaacggctgaaggtggcttttggc
ttcccatgggaatccacactgtgctctttaacaccttttgccgcagtagacgacacccat
gattccagtgaggatgagcaggaagtcaagagcaagccgatgaaaaagtcccgtaaagag
ttgaagcaggagcagcagaacgcggagcagcagctcagcaagctggaggcggagctcatg
gacacgtctgtgcgtccggacagcacagtggcgtttgagcgtctgctcctgtcgtctcca
gacagctccctcctctggctgcagtacatggctttccatctgcaggccacgcagatcgag
caggcgcgtgcggtcggcgagagagccctcaaaaccatctccttcagagaggagcaggag
aagctgaatgtgtgggtggccatactaaatctggagaacatgtacgggacacaagaaagc
ttgcagaaagtctttgaacgggccatccagtactgtgaacctcttcctgtgtatcagcag
ctagcagacatttacgccaagtcggacaagatcaaagaggctgagagtctttataaaagc
atggtgaaacgcttcaaacaggagaaagctgtatatctgagttatggcaacttcctgcta
cgacagcatcagagtgacgctgcaaatgcccttctgcagagggcgctgcaaagcctgtcc
aataaagaacatgtggacctgattgtcaaatttgcccggttggagtttcagtacgggaac
gctgagagagccnnaatgtttaacaaggtcctgagtacctaccccaaacgcacagacctg
tggtccgtgtttatagacttgatggtgaagcacggctctcagaaggaagtgagagagctt
tttgatcgtgtgattcacctgagtgtgtcggtgaagaagatcaagttcttctttaagctt
ctggagtacgagaagaagaacggcacacctgagaccatccaggcggtcaaacagaaagcc
ctaggatatgtggagtcgaaaggagcagaaactgccagctag
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