KEGG   Cyprinus carpio (common carp): 109068832
Entry
109068832         CDS       T05134                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109068832 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109068832 (taf5)
   03036 Chromosome and associated proteins [BR:ccar03036]
    109068832 (taf5)
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109068832 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     109068832 (taf5)
Chromosome and associated proteins [BR:ccar03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109068832 (taf5)
    STAGA complex
     109068832 (taf5)
    TFTC complex
     109068832 (taf5)
    SAGA complex
     109068832 (taf5)
    SLIK complex
     109068832 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st TFIID_NTD2 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st WDR55 NBCH_WD40 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_DCAF12 RMC1_N WD_LRWD1 Tricorn_2nd Beta-prop_Nup120_160 VPS8_N Beta-prop_WDR35_TULP_N LisH_PAC1 PEP5_VPS11_N PROPPIN Beta-prop_ACSF4 LisH_TPL Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 109068832
NCBI-ProteinID: XP_042617527
UniProt: A0A9R0B011
LinkDB
Position
A1:30395093..30402886
AA seq 751 aa
MTPLLSAPGKMAAVQDGPMELDTEKETKPEILSDGTSKLSGNAASGTLSSSPLTAGGAPK
QEDQQTLIAVLQFLRRNKLSESVEILRREAGLEDQEDSQTLDGSGGGKGDRDGGEANSLL
SRVSITSAAAPQSTLTPITVKRANEQLDVSVVLSAYSQQGDPSLYQVYYSGLKNFIESVL
DCHRAELSQLFYPLFVHMYLELVYNNHENEAKAFFEKFGGDQECYYQDDLRVLCGLTKKE
HLKGNEVLLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSK
SQIDSMSGSFAGEARREVNKVKVFHGLLKEPEIEVPLDDEEDEAENEEGKPKKKKTKKDS
MGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGPENLPSICFYSFLNA
YQGLTAVDFTDDSSLLAGGFADSTVRIWSVTPKKLRKVKSAGELNLIDKESDDVLERIMD
EKTASESKILCGHSGPVYSVSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW
DTHFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDR
TIRLWDVLNGNCVRIFTGHKGPVHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKG
HTDTIYALKFSRDGEILASGSMDNTVRLWDSTKAFDDVETDDFTAATGHIHLPDNSQELL
LGTYHSKSTPVTHLHFTRRNLLLAAGGYSSQ
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgacgccattgctttcagcgccaggaaaaatggcggctgtgcaagatggaccgatggag
ctggacacagagaaagagacaaagccagaaatcctcagcgatgggacgtcaaagctctcg
gggaacgcagcgagcgggacgctgtcctcatcgcccctcaccgccggcggagccccgaag
caggaggaccagcaaactttgatcgcagttctgcagtttctcaggcggaataagctgtcg
gagtcggtggagattctgcggcgggaagccggtttagaagaccaggaggactcacagact
ctcgatggcagcggaggagggaagggtgacagggatggaggggaggcaaactctctgctc
agccgggtgtccatcacatcagcagccgccccccaaagcaccctgactcccataacagtc
aagagagctaatgagcagctggatgtcagtgtggtgctgtcagcgtacagccagcagggg
gatccctctctgtatcaggtgtactacagcggtctgaagaacttcatcgagtccgtgctg
gactgtcaccgagcggagctgtcccagctcttctaccctctgttcgttcacatgtacctg
gagctggtctacaacaaccacgagaacgaagcaaaggctttctttgagaagttcggtggg
gatcaggagtgttactatcaggatgacctgcgcgttctctgcggcctcactaagaaagag
cacctgaaggggaacgaggtgctgctggacttccgcaccagccgcttcgtgctgcgcatc
tcccgagactcgtaccagctgctcaagagacacttacaggaaaggcataataaccagata
tggaacatcattcaggagcacttgtacatcgacatctttgacggcatgccgcgcagcaaa
agccagatcgacagcatgtccggcagttttgcgggagaggccagacgagaagtcaataaa
gtcaaggtattccacgggctgctaaaggagccagagattgaggtcccgttagatgatgaa
gaagatgaagcagagaatgaggaagggaagcccaagaagaagaaaaccaaaaaggacagt
atgggctccaagagtaagaaacaagaccccaatgctcctcaacagaacaggatccctctg
ccggagctgaaggactcagacaaactggacaagatcatgtacatgaaggagagcaccaaa
agaatccggctcggcccggagaacctgccttccatttgcttctattcgttcctcaacgcc
taccagggtttgacggcagtagacttcactgatgactcgagtctgttagcgggagggttt
gcagactccacagtccgcatatggagcgtcacacctaaaaaattacgcaaggtcaaatct
gcaggagaattgaatctgattgataaagagtctgatgacgttctggagaggatcatggat
gagaagacggccagtgagtcaaagatcctctgcggtcacagcgggccggtgtacagtgtc
agcttcagtccagacaggaactatctgttgtccagttctgaggacggtacagtccgactg
tggagcctgcaaacgtttacgtgtctcgtggggtataaaggacataactatccagtgtgg
gacacccacttctcaccctttggttattactttgtgtctggaggacatgacagagtagca
cgcctctgggcgacggatcattaccagcccttgcggatatttgctgggcatctggctgac
gtcacctgcacgcgattccaccccaactctaactatgtggccacaggctcgaccgaccgc
actatacgcctctgggatgtcctgaatggaaactgtgtccgcattttcacaggtcacaag
ggccctgtccactctctagcgttctcacccaatggaaagttcctggcatctggatccaca
gacgggagagttttactatgggatattggacatggactgatgatcggagagctgaagggt
cacacagacacaatttatgccctcaagttcagcagagatggagaaatcctcgcatcagga
tctatggataacaccgtgcggctatgggactccacgaaggctttcgatgacgtggagacg
gacgacttcaccgcagcgacgggccacattcacctgccggataactcccaggagctgctg
cttgggacgtatcacagcaaatccacaccggtcacccacctccacttcaccagacgcaac
ctgctgctggccgcaggcgggtacagctcccagtga

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