Cyprinus carpio (common carp): 109069407
Help
Entry
109069407 CDS
T05134
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109069407
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
109069407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIM
Motif
Other DBs
NCBI-GeneID:
109069407
NCBI-ProteinID:
XP_042624767
Ensembl:
ENSCCRG00000031614
UniProt:
A0A9Q9YQY5
LinkDB
All DBs
Position
A13:12992980..13025412
Genome browser
AA seq
1906 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRVRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQTEVAAHACASMCDEMVVLWRLA
VLDPTMSPQRRLELAAQLKLWHLKVIEIVKRGQHRKSLDKLFQGFKPAVECCYFNWEVAY
PLPGITYCGADKKNASFCWVRTVQQQRGAKAGTSGEPGEGARGGTSEGTSSEQKSRCNSH
LPQQEVAVRPKETIVSKRKGVSGVNSGGVLVCLGGRVSISLQEGGKGMHKASSSSQTAGS
KTKLIQSNKGSCGSSSGVSGKHPSAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASNT
FDFLPPPPEMLPSPSPLLREPLKYSGNASKERAYETKRVLPSAADAHACSIAIPVVVAME
KKVEVEADLDENAGDEDPVDDTRPSAALPGKAQQGRREGDGSVVSGVSGPQAAEAAAGAD
AVCEDDYQAYYLSAASEEGADRGVADSNHEEEPDIFAGIKPLEQEGRMEILFACVEALYA
HGYSNEACRLAVDLARDLLANPPDLKVEQPQTKGKKSKVSTSKQTQVATNTLSKVAFLLT
VLSERLELHNLAFNTGMFSLELQRPPASTKALEVKLAYQESEVVALLKKIPLGLVEMTSI
RDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEMPGDEELGF
EAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQ
THKPQTLSSFYSSKPATSSQKSPSKHATHGASGATGGVSKHTPAATSSSSVQGVTGGGAA
GQQGTLVGSGVQSAVTGEGIADNRDQEGAQSTSCEQQSEAAPFKPEGTVPSRLALGGRGA
YGTRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPFRGGWTAASWGRGQDSDSI
SSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRRPESHAPHVPNQPSEAAAHFYFEL
AKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTY
SSHVSWITGDVDFGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSC
LPHAHALNPNEIQRALVQCKEQDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYE
QTVGGGSGAQREGSGRCRANGGAGRTPPEGSCGILDNTGAMDPSGVAAVTTTVTAAAVVP
VISVGSTIYQSHALPGSAMGHAQGLHPYTTIQTHLPTVCTPQYLGHPLQHIPRPAVFPVS
GAAYPQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPMPSMTQIAVHPYHTAEALST
TVAGVHSGSTIQAIQGASHPGLSSQPASLVSAPFPVEDEQHSQPISQQGLHYLHSAYRVG
MLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNHVYQFCVGAAKGVLSPFV
LQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNII
RSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgctgagtgggaagacggagagaggttctcctttgaagattcagac
cgttttgaggaggactccctgtgctcattcatatcagaggcagaaagtctctgccagaac
tggagaggatggaggaaacagtcagccggcccaaattcacccactgtgaagattaaagat
ggacaagtcatccctctggtggagctgtcggccaagcaggtggcgttccatattccattt
gaggtggtggaaaaggtctatcctcccgttcctgagcagctgcaattgcggattgcctac
tggagctttccagagaatgaggaggacatcagattatactcctgtttggccaacggcagc
cctgatgagttccagcgtggcgaacagctctatagagtgagggctgtgaaagaccctcta
cagataggtttccacctcagtgccacagtagtgtcaccccaggccggccaatcaaaagga
gcctacaatgtggctgtaatgtttgaccgctgccgcatcacttcctgcagctgcacctgt
ggagcaggagccaaatggtgtgcccacgttgtggccctctgcctcttcagaattcacaat
gcttctgcagtgtgtcttcgagcacctgtgtcagagtccctgtccagattacagcgggat
caactccagaagtttgcacaatacctcatcagtgaactcccgcagcagatcttgccgaca
gctcagcgtcttttggatgagcttctgtcctcccagtctaccgctattaacaccgtgtgt
ggagccccagatcctactgctggcccttcagcctctgaccagagcacctggtatctagat
gagtccaccctcagtgacaacataaagaagaccttgcacaagttctgtggcccatcacct
gttgtgtttagtgatgtgaactccatgtacctgtcatccactgagcctccagcagctgcc
gaatgggcttgtttgctgaggcccctgcgaggtagagagccggagggcatctggaacctt
ctgtccatcgtcagagagatgtttaagaggagagacagcaatgctgcgcctctgttagaa
atcctcactgaacagtgtctcacctatgaacagatcattggctggtggtatagtgtgagg
acatcggcctctcacagcagtgctagcgggcacacaggtcgcagtaatggccagacagag
gttgcagcacatgcgtgtgccagcatgtgtgatgaaatggttgttttatggagactggca
gtgctcgaccctaccatgagtccccagaggcgtttggagcttgctgcccagctaaagcta
tggcacctgaaggtaatagagatcgtgaaacgggggcagcaccgcaagtctcttgacaaa
ctcttccagggcttcaaaccagctgtggagtgctgctacttcaactgggaagtggcctac
cctttacctggcatcacctattgtggcgcagataagaaaaacgcctcattttgttgggtc
aggacggtgcagcagcagcggggcgctaaagctgggaccagtggggaaccaggagaagga
gctcgcggtggaacgtcagaaggtacttcctctgaacaaaagtcacggtgcaactctcat
cttccccagcaggaggtggctgtccgccctaaggagaccattgtgagcaagaggaaagga
gtgtcaggtgtgaatagtggaggcgtgctggtttgtctgggtggaagggtctctatctca
cttcaggagggaggtaaaggcatgcataaagctagtagctcctcccaaacagctggtagt
aagaccaagcttatacagagcaacaagggttcatgtggaagttcgagtggcgtcagcggg
aagcaccccagcgctaaacggcgaactagcagtgaagacagctctctagagcctgacatg
gcagagctgagtctggatgatggttccagtctggcgcttggagcggaggcctctaacacc
tttgatttcctgcctcctccaccagagatgttgccctcacccagtcctcttctccgagag
ccactcaaatacagtggtaatgcttcaaaagagcgtgcatatgagacaaaacgtgtgctg
ccctctgctgctgatgcccatgcctgctccattgcaattccagtagtggtagctatggag
aaaaaggtggaagtggaggcagatctggatgagaacgcaggagatgaggaccccgtagat
gatactcggccctctgcagcgctccccggcaaggctcagcagggccgcagagagggagat
ggaagcgttgtttcaggggtctcagggcctcaggcagctgaggcagcagcaggagcagat
gctgtgtgtgaagatgactatcaagcgtattaccttagtgccgcatcagaagagggagca
gatagaggggtagcagacagcaaccatgaagaagagccagacatctttgccgggattaaa
cctctggagcaggagggtaggatggagatcctttttgcctgtgtggaggctctctatgct
catggctatagtaatgaagcgtgccgactggctgttgatcttgctcgagatctgctggct
aaccctcctgacctgaaggtggagcagccgcagacaaagggtaaaaagagtaaggtgtcg
accagtaaacagactcaggtggccactaacaccctgtctaaagtagccttcctgctgact
gtgttgagtgagaggctggaactccataacctggcattcaacactggcatgttctccctg
gagctgcagagaccgccggcttctactaaagctctggaggtgaagctggcatatcaggag
tcagaggtggtggctctgctgaagaagattcctctgggtcttgtagaaatgacttccata
agggaccgagcagagcagctccgtgatggaaacttctgcgactatcgtccggttctgccc
ctcatgctggcaagcttcatatttgacgtactctgcacccctgtggtctctcccacgggc
tctcgacctcctagtaggaaccgtaacaatgagatgcctggtgatgaggagctgggattt
gaggcagctgtagcagctcttggtatgaagacaacggtcagtgaggcagagcatcctctg
ctgtgtgaagggacacggagagagaaaggagacctggctctagcactgatgatcacctat
aaagatgaccaaagcaagcttaaaaagattctggacaagctcctggatcgtgagagccag
acccataagcctcagactctgagctccttttactcaagcaaaccagccacgagcagtcaa
aagagcccatccaaacacgccactcatggtgccagcggagccacgggaggagtgtcaaag
cacacccctgctgcaacatcatcatcatctgtgcagggcgtgaccggcgggggagcggca
gggcagcagggcactttagtgggtagtggagttcagagtgcagtgaccggagagggcatc
gctgacaacagagatcaagagggtgcgcagtcgacctcctgtgagcagcagagtgaagct
gcgcccttcaagcctgagggcactgtgcccagtcgtttggcactggggggtcgcggggca
tacggcacgcgctgctggggatcacctgtacggcagaaaaagaaacacactggcatggca
agcattgacagcagtgctccagagaccacctcagatagctctcctactctcagtcgacgc
ccattccgaggtggttggaccgcagcttcctgggggagaggccaggacagtgacagcatt
agcagctcttcttctgattcacttggctcatcatcatccagcggctcacgcagagctgga
ggaggagccagagccaagagtaccgacaccagcaggtacaaaggtcgccggcctgaaagc
catgctccacatgtgcccaaccagccatctgaggcagctgctcatttttactttgagctg
gccaagactgtgctgattaaagctggtggaaacagctccacatccattttcactcaaccc
tctgccagcggaggccatcaagggccccaccgcaacctgcatctgtgtgcctttgaaatc
ggcctgtatgccctcggcctgcataattttgtgtctccaaactggctgtcaaggacgtat
tcctcacatgtatcctggattacaggggatgtggattttgggagtgctgccctcaacatc
ctggtggaatgctgggatgggcacctcacgcctccggaggtggcgtcactcgcagaccgc
gcatcacgagcacgggatcccaacatggtgcgagccgcggcagagctggctttgagctgc
ttgcctcacgctcacgccctcaaccccaacgagattcagagagccctggtgcagtgcaag
gagcaggataatgtgatgctggagaaagcttgcatggcagttgaggaggctgcaaaggga
ggcggtgtttatcctgaggtcttgtttgaggtggctcaccagtggtattggctatacgag
caaacagtgggtggaggctctggggcccagcgagaggggtccggccgctgtagggccaat
ggtggagcagggagaacgccacctgagggaagctgtggtatcctggataacactggagcc
atggatccatcaggtgttgcagctgtaactacaacagtgacagcagccgccgtagtacct
gtcatttctgttggctccaccatctaccagtcacacgcactgcctggctcagccatggga
cacgcgcaaggcctgcatccctacaccactatccaaacccatctgcctaccgtctgcacc
ccgcagtacctgggccacccccttcagcacattccccgtcctgctgtcttccctgtgtct
ggggcggcctacccacaaggaatgcaccctgcttttattggtgctcagtacccattctct
gtggccactggccctcatcctcctatggcagcgaccgctgtcactttccctggagttcca
atgccgtccatgactcagatcgctgtccacccgtaccataccgcagaggctcttagcact
actgtggcaggagtacactcaggctccaccatccaggccattcaaggggcttctcatcca
ggactctcatcccagcccgcctcactggtcagcgcacccttccctgtggaagacgagcag
cacagtcaaccaatcagccagcagggcctgcactacctccactcggcctacagagtcggc
atgctggccttggagatgttgggaaggagggcccacaacgatcatccaaacaacttttcc
cgtagccccccgtacactgaagacgtcaaatggctgttgggcttggctgcgcgtcttggt
gtgaaccacgtgtaccagttttgtgtgggggcagcgaaaggtgttcttagtccatttgtc
ctgcaggagatcattatggaggctctgcagaggttaaaccctgcacatatccacgcacac
ctccgcactccagccttccaccagctcgtgcagcgctgccagcaggcctacttacagtat
atccaccataggctgatccatctgactcctgcggactacgacgacttcgtgaacatcatc
cgaagtgcccgcggagcattttgcctgacaccagttggcatgatgcagttcaatgacgtg
ctacagaacctaaagaggggcaaacagactaaagaactatggcagcggatctcgttggag
atggccactttctcaccctga
DBGET
integrated database retrieval system
