Cyprinus carpio (common carp): 109070305
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Entry
109070305 CDS
T05134
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109070305
03015 mRNA surveillance pathway
109070305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109070305
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109070305
mRNA cycle factors
P-body specific factors
109070305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_1
Motif
Other DBs
NCBI-GeneID:
109070305
NCBI-ProteinID:
XP_018942424
Ensembl:
ENSCCRG00000023877
UniProt:
A0A8C2HRA1
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All DBs
Position
A9:complement(19986654..19994692)
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AA seq
481 aa
AA seq
DB search
MRSEKEQRIGSRERGSVEIQFRECQREQDNVAVNPKHKEEKKETFTKVVIRRLPPSLSKD
QLEEHLSPLPTFDYFEFFPADQSLYPHLFSRAYINFKNPEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDVDSDRLKDKADSGEAEKNRWEKPAGHTKSK
DSKDNRSQIESDKEQREGHSRRQRDKEHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKDQHHGYSFCPEAGDKLGKEDREDMGSRKERIRNKSVLVHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRMGSGNKMFDFSPISPEHGGEHCYKTVIGTGSEKSAD
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagaggataggaagcagggagagaggcagcgtcgagatccag
ttcagggagtgtcagagggagcaggacaacgtcgcggtgaacccgaagcacaaagaggaa
aaaaaggagaccttcactaaggttgtcatacgccgactgccacccagtttatcaaaagac
cagctcgaggagcatctgagtcctcttccaacttttgactattttgagttcttccccgct
gatcagagcttatacccacatctcttctcaagagcatacatcaacttcaaaaacccagag
gatatcattattttcagagatcgctttgatggctatgtattcattgataataaaggccaa
gagtatccagctgttgtagaatttgctccatttcagaaagtttccaagaaaaagttaaag
aagaaagatgctaaagcaggaactattgaagaagacccagaatacaggcgatttctggaa
aattactcttgtgatgaggagaaatcaatggccaatccagaaacactactgggagagatt
gaagctaaaacccgagaactcatagccaaaaggacaacacccttgctggaatacatcaaa
aacaagaaattagagaaacagagaatacgagaggaaaaaagagaggagaggcgaaggagg
gaactggaaaagaagcgacagagggaagaggagaagcggaagcggagagaagaggagaga
cgaaagcggaaggaggctgaaaagcagaagaaactttctgaaaaggagataaagatcaag
cttttgaagaagtgtgatcgagacgatgacgtggactcagacagactgaaagataaagca
gacagtggagaggcagagaagaacagatgggaaaagccggcaggacacacgaagtcaaag
gattccaaggataataggagtcaaattgagagtgacaaggagcagcgggaaggtcacagc
cgtcgccagagggacaaagagcatcgcggcagagacgaggagcgcaaacgacagaggcat
cactacgagtttgacaagtttatgcgacgcaaggaggagaccaaatggggtaaaggctac
tgtcaggacagagccaagaaagaccaacatcatggctattctttctgcccagaggctgga
gacaaactgggaaaagaggatcgagaggacatgggcagcaggaaagaacggattcgcaat
aagtctgtgttagtgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgacccgcaatgcagctgtaccaacctggtgctaga
aatcgcaagcgaatgggctctgggaacaagatgtttgacttctcaccaatctctcccgaa
cacggaggagaacactgctacaagacggtcattggtacaggctcagagaagagtgctgat
gactga
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