Cyprinus carpio (common carp): 109070318
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Entry
109070318 CDS
T05134
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109070318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109070318
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109070318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_11
TPR_16
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_7
RPN7
Fis1_TPR_C
HAT_Syf1_CNRKL1_N
TPR_MalT
HAT_PRP39_N
SHPRH_helical-1st
ARM_TT21_C
PknG_TPR
TPR_15
TPR_21
TPR-S
Motif
Other DBs
NCBI-GeneID:
109070318
NCBI-ProteinID:
XP_042580579
Ensembl:
ENSCCRG00000028424
UniProt:
A0A9Q9WBX1
LinkDB
All DBs
Position
B5:complement(17946285..17965928)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
TAYRKATELEPEQLLAWQGLANLYEKSDQADFKAELPKIYQKLITLYETSDKAKCLEVSK
KLVEVYQSEKNYLQVARVWRRLIQVREAEDLELLELWKEMTRLLQDTVEDQDNETQQHLI
SAFERALQLMIDVPSEAHRSLSQDYIKCLSKLPHEVAKLKEVCDATLSRYPTHSYPLEAL
SEHYIRTGDCSEEAVHCFSRLSELDPNNSHAHFGLGIKACQDKKYEDAIKSISLGLKRMR
SSIIGWYNLALAQLKMHKYSDSATASSQGLKSSVGNSDDWTNKLQRLKLEALVRTGRDQD
ADEALQILTQISDAKNDPVILALKGRAHLQKGQTEEAFQVSAELLSSHPGSVEGLTLKGL
VHVAKEQHKQAEESFLEALSGSPDNGELFFLLGRLFWNMGEEVRRDRSKAHTHLLKAAKL
DPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAESGAATVDLSMEQGDMDSAL
TVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECLGEAY
LNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDYVPAL
KGLGECLLALARSALDDYLDGRAVDLIQNAIHYLFRALKQRPDLSCLWKLLGDACTTSRT
VSPNRAKVLVPGALYGMDPLDQGHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDLGLNY
YHQSRLLNCLNPEEDQQPLLEKAMQCVKKAIMLNSANHTYWNALGVVSMANGIENFALAQ
HCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQALIAES
VGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSEIYLYNIVQMNAVSAAQV
ALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTDKLSFALRGYG
HALSDDGQWEEAVRIYSSTPLEELHDLIGLALAYFRIGRMPESVQAYEKALAVASSEKEK
ACILTALALIQHRLGNIDHAKTLLFKCSMLKEPVSESLQCLCSLGLVHGDVTLASATLTE
LLKLGEGVGGAVEVRCLLTCTLLALQGNYSGVHREAARAIHRNPGNPSLWALLSRLVPQY
CPNKANGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRRNALKTIQRAVLLC
PDDAAGWAGLMAACHTENTACLLQGSAPRREDLERAHMTLVSEKVKGLQAEDGLLAQALE
GWVLQQTVTGLKQSGQYDQAETLCSQVLSVSPEHPVVLLRLRQVQCECLLLSDAGNCVPP
AVLDQLSAAVMANHTSVSAWHWLAEVYHSQGLLAQASVAYRQSLQLASQLGDHIGKISSL
LRLALLALMPCLAGVCVSEWKDLVLEASTEVLKMGSSPVALLFQALLQFSIKMGARETRR
LLEKIVYASASGGSETIASVARWYLLRHLHAKDDLELIDTLLVKATAEGDHRLVDFHRRL
YPSS
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaagctgaactaaaaagtgccagagaagccatcaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactat
aatgcctgggtgtttattggagtggcagctacagagctgcagcagccggatcaggcacag
accgcctacagaaaggccactgaactggagccagagcagctgcttgcatggcagggttta
gcaaatctgtacgaaaaaagtgaccaggcggatttcaaagctgagctgccaaagatttac
cagaaacttattacactgtatgaaacctcagacaaagcaaaatgtttggaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggccagagtgtggagg
aggttaatccaggtgagggaggccgaggatttagagctgctggagctgtggaaggagatg
accagactcttgcaggacacggttgaggaccaggacaatgagactcaacaacacctgata
tcagcatttgaaagagctttgcaactgatgatagatgtgcccagtgaagcccacaggagc
ctttcacaggactacattaaatgtctttccaagcttcctcatgaggtggccaagctaaag
gaagtttgtgatgccacgctgtcccgctatccgacacactcctaccctctagaggccctc
agtgagcactacatcagaacaggtgactgcagtgaggaagctgtccactgtttcagccgt
ctctctgaactggatccaaacaactcacacgctcactttggtcttggtattaaagcttgt
caggataaaaaatatgaggatgccattaaaagtattagtctaggattgaagcgtatgcgc
tcctccatcattggctggtataatctcgctctggctcaactaaaaatgcataaatattct
gacagtgccacagcttccagccaagggctgaagtcgagtgtggggaactctgatgattgg
actaataagctgcagaggttaaaactagaggctctggtaaggacaggaagagaccaggat
gctgatgaagctctgcagatccttacacagatttcagatgccaaaaatgacccagtgatt
ttagctttgaaaggaagagctcacttgcaaaaaggccaaactgaggaagcatttcaggtt
tcagctgagctgctgagctctcacccaggatctgtggagggtcttactctgaaagggctg
gtgcatgttgcgaaagaacagcacaaacaagctgaagaaagctttctagaggctttatcc
ggtagcccagataatggggagttgtttttcctgctgggacgcctcttctggaacatggga
gaggaagtgcgaagggatcgcagcaaagcccatacacatttactcaaggctgctaaactg
gacccgtatctcggttcagtgtttcgttttctgggtcattactatagagaggtagcaaaa
gatcagggcagagccagaggctgctataagagagcatttgagctggattcctctgatgca
gagtctggagcggctactgtagacctcagcatggagcaaggggacatggactcagctctg
actgttctgcagtctgtaacagagagagccactcctggctctgctaaatgggcctggatg
aggagagggctctaccacctcaagattggccagcatcaacaggccattgcagatctgcag
gcggcgttgagggcagatcctcaggattgggtgtgctgggaatgtttaggtgaggcttac
cttaaccgcaggagtttcacagcagccctgaaagcattcgataaagcacatactctgcag
cccacctccatctacagcctctatcagaccgctgccatcaaacagattctcggccggttt
aaagaggccgctgcagagtacaggcaaatcttagagcaggaggactatgtgccagcattg
aaaggtctgggtgaatgcttgctagccttggctagaagtgcacttgatgactatcttgat
ggaagagctgtagatttgatacagaatgccatccattaccttttcagagctttaaagcaa
aggccagacctgtcgtgtctctggaagttactaggtgatgcctgcaccacctccagaact
gtgtccccaaaccgagccaaagtgctggtgcctggagctctatatggaatggatccactt
gatcagggccatacactggaccagagacagctcctcactctaggagaaaggtgctttggt
cgtgctttgaaactcatgccggaggcccctagtctgtggtgtgaccttggcctgaactac
taccatcagtccagactgctcaactgcctcaatcctgaagaggatcagcagcctctgctg
gagaaagccatgcagtgtgtgaagaaggcgatcatgctcaacagtgcaaatcacacatac
tggaatgccctcggggtggtctccatggcaaacggaatagaaaactttgcacttgcacaa
cactgctttatcaaatcggtaaaagcggagtcaaataatgtggttgcatggaccaacctt
ggtgctttgtatctgaagaagggaaatatagagctctcacatgaagcgtttaagattgct
cagtctctagaacccctctatgtgaattgctggatcggacaggccctgattgctgagtca
gtgggcagttatgacaccatggatcttttcagacacaccacagaactgagcactcatact
gagggagtgaagggttatgcatattgggtttgctccacactgctggacaggagcaacaga
gactccgagatctacctctacaacatagtccagatgaacgctgtctctgctgcccaggtg
gctctgagcaagtacaccgagaggattcagacagacccagatgccttcatcatgctcgga
tacctgaacacacacctgcagctgaagaaacaggccactgaggcatatcgcagagctgtc
gagttgcttcaggcgtcccctcacacagacaagctcagctttgctctgaggggttatgga
catgcactcagtgatgatggacagtgggaagaagcagtgcgtatttattcctccacacca
ctagaggagctgcatgatctcattgggctggcgcttgcctatttcagaattggacgcatg
ccagaaagtgttcaggcctatgagaaagcccttgcagttgcctctagtgagaaggaaaag
gcctgtatactcactgcactggccctgatacagcacaggctgggcaacatcgatcatgcc
aaaactcttctcttcaagtgctccatgctgaaagagcccgtctcagagagtctgcagtgt
ctgtgttctctgggtttggttcatggggatgtgaccctggcaagtgctacgcttactgag
ctgctaaaactgggggaaggtgtaggaggcgctgtggaagtgcgctgtctgctcacttgc
accctgctggccctgcagggcaactatagcggcgtacacagggaggctgctagggctata
cacaggaacccaggaaatccttctctctgggctcttctctccagactggtcccacagtac
tgccccaacaaagccaatggaggtgctgtggctggaagtgtggcgtgtcatgccagcttg
acgcttggaaagagggcattgctgtacagtggagtgaatcagttggcctcaggccggcac
tctggtgaggacagaagacgaaacgctctgaaaacaatccagagagccgtgctgctgtgc
ccagatgatgctgctgggtgggcggggcttatggctgcctgtcacacagagaacactgca
tgcttactccaaggctccgcccctcgcagagaagatctggagagggcgcacatgactctg
gtgtctgaaaaagtgaagggcctgcaggcagaggatgggctcttggctcaggctctggag
ggatgggtgctgcagcaaaccgtgactggcctcaaacagagtggccaatatgaccaggca
gagactctctgctcccaggttctgagtgtatctccagagcatcctgtggtgctcctgaga
ttaaggcaggttcagtgtgagtgcctcctgttgtctgacgccggtaactgtgttcctcct
gcggtgctggatcagctcagcgctgctgtcatggccaaccacacatctgtgtccgcctgg
cattggttggcagaagtgtaccattctcagggtctgctggctcaggcctctgttgcatat
agacagagtcttcagctggcttctcagctcggtgaccacattggaaagataagcagtctg
ctccgactagccctgctggcacttatgccgtgtttggctggtgtctgtgtctctgagtgg
aaggatctggtgttggaggccagcactgaagtcttaaagatgggcagctcaccagtagct
ctgctcttccaagccttattgcagttctctataaagatgggtgccagggaaacccgacgc
ctgttggagaagattgtttatgcttcagcctcaggcggctctgaaacaatagcgtcagtg
gcacgctggtacctcctgcgccacctgcacgctaaagatgacctggagctgatagatact
ctgttggtgaaggcaacagcagaaggagaccacagactggtggatttccacagacgcctt
tacccatccagctga
DBGET
integrated database retrieval system
