Cyprinus carpio (common carp): 109070622
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Entry
109070622 CDS
T05134
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109070622
09123 Folding, sorting and degradation
03018 RNA degradation
109070622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109070622
03041 Spliceosome [BR:
ccar03041
]
109070622
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109070622
mRNA degradation factors
5'-3' decay
Lsm complex
109070622
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109070622
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
109070622
NCBI-ProteinID:
XP_018942702
Ensembl:
ENSCCRG00000044741
LinkDB
All DBs
Position
B11
Genome browser
AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
VRGSTIKYLRIPDEIIDMVKEDVMSKGRGRGGMQQNKPQGKGRGGGPGRGGGAGRGVFGG
RGRGMTGTGRGQQQDKKPGKPQGVKNQH
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgttatctttactgaagacagctcagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaacggccatctggtcagctgtgacaactggatgaacatcaacttg
agagaagtcatttgcacttcacgggatggagataaattttggaggatgccggagtgctac
gtcagaggaagcaccattaaatacttacgaatccctgatgagatcatagatatggtgaaa
gaggacgtaatgtcgaagggacgtggccgggggggcatgcagcagaacaaaccacaggga
aagggcagaggaggcggacctggaagaggtggtggagccggcagaggtgttttcggtggc
cgtggcagaggcatgacgggaactggccgtggacagcaacaagacaaaaagcctggaaaa
ccacaaggtgtcaaaaaccaacactag
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