Cyprinus carpio (common carp): 109071450
Help
Entry
109071450 CDS
T05134
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04382
Cornified envelope formation
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
ccar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109071450
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109071450
09142 Cell motility
04820 Cytoskeleton in muscle cells
109071450
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109071450
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccar04147
]
109071450
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109071450
Exosome [BR:
ccar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109071450
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109071450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109071450
NCBI-ProteinID:
XP_042616714
UniProt:
A0A9Q9YAN2
LinkDB
All DBs
Position
A7:29631380..29760065
Genome browser
AA seq
1712 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGELGQMGSSGPE
GVIGAPGPVGPKGEKGHVGRKGLPGQNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGDRAHDGFPGLPGAPGLSGRKGQKGEPYYINLSGQKGPPGPMGFSGPVGPR
GPDGFPGAPGPPGPSGPPGSPGQGYKGDPGEKGDLGPAGLRGSPAVQFNAPAISTINKGE
KGDVGLPGDPGCPLVNGVVELVGFPKGDKGTKGEKGYDGAPGSTGRPGPPGPFGNRGETG
EKGILGLPGLRGPPGLNGPPGPPGIKGFPGTQGFLGQPGFTGTKGVRGDPGPPGPIVEPE
VGIKGPSGDPGFPGYPGITGDTGLPGLPGQPGAPGVPASLTGRPGSTGFPGSHGPKGQRG
NPGQNSYGPEGLPGNQGLPGPPGLPGPPGSTSNQFPAGLPGFPGHPGPRGFPGDRGFKGF
KGENGDCNCLGGGTIGAQGPQGSPGAPGIAGLSGVKGEIGDPGFPGPRGPQGLDGRAGGT
GFRGRKGEKGNTFFPEGRGQKGDMGQRGPPGPLGESGNSGRDGSPGFPGQPGPPGEPGFG
VTGDKGFPGFPGPKGRPGERGEPGIGYPGVAGFKGSQGDPGFNGLPGTPGPPGSPGDGCG
QAGLNDASLEEGGTPLPCRIPGEIGDPGYFGNPGVPGPKGKSGSPGVSGSPGFDGPKGER
GEPGSGGRPGPEGFPGPRGDPGLPGTTNAGLQGLPGRDGFPGLPGAKGEPGVVLGAAPGG
PGSPGRPGEPGDKGQPGARGLSGRLGNDGRNGFPGIKGERGVDGIPGRMGPIGPPGEIPP
GGVPGPRGPPGAKGMDGSPGCQGFPGVKGMRGDPGPPGTGGIKGIPGPPGNPGSQGFRGP
PGPPGIGTRPGKPGRPGIKGEKGSFGLLGFPGFPGSPGVPGGPGFKGLPGFAGQDGLPGG
TGQRGTKGERGAPGLPGPSPPFIPVKELEKGEKGDPGVGGPPGFPGPRGDKGFPGLPGRE
GFPGSPGVADQAKGFPGQPGLPGIPGSFGFPGPKGSSGVMGFPGLPGQRGDDGVPGVKGF
PGTPGQTGGKGEKGDSYEISGPPGPKGVIGNPGFPGVSGLPGEPGDPGSPGVSGFQGQKG
FPGEPGARGFDGSPGLPGIKGLPGYSGQKGRDGNPGRPGAPGSTGEKGFPGSPGLHGLNG
LQGSKGLPGVPGVTEGVRAGAPGVNGLKGERGSSQPGAPGRPGEKGSRGDPGAPGLRGFP
GNPGPPGPPSLSNIPGPPGDPGLPGLDGREGPFGPPGLPGPPGPGTIQGDRGDAGFPGRP
GLPGPRGEPGGFGAPGLQGSPGFKGQRGDPGFSGVSGPPGLPGEPGYFGRNGPKGLKGFP
GSKGLPGVVFPPKITNNMPSGEQGPPGLDGSVGQAGMPGLPGSPGVPGPKGPRGPVGRLG
PVGAAGSPGTFGDPGPPGIQGPTGTQGTRGSPGMQGLPGSPARSTSIGYTLVKHSQSSQV
PMCPQGMSKLWDGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTIPFLYCTVSDICYYASRN
DKSYWLSTTAPIPMMPVADQQISQYISRCSVCEAPSHAIAIHSQDLSIPNCPQGWRSLWI
GYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAHGTCHYFANKYSFWLTTVEL
NEQFIQGPSQETLKGVEYRSRISRCQVCMKIL
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttacctgttgtcttgtatgcagtgtctgcacaaggggga
tcaaagctgcaggagccgtgtgcaggccgggactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcagcctggggaacttggacagatgggcagcagtggtcctgag
ggtgttattggggccccagggccagttgggcccaaaggagaaaagggccatgtaggacgc
aaaggcctccctgggcaaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggagttccaggacaccccggtcaggaggggcccaggggaccaccaggtttggat
ggctgtaatggcacacgtggtgacccaggtgacagagcccatgatggatttcctggtctg
cccggtgctcctggactctctggtcgaaaaggacaaaaaggagaaccatattatataaat
ctttctggacaaaaaggccctccaggtccaatgggattttcaggtccagtggggcccaga
ggtccagatggatttcctggtgcgcctggtccacctggtccttcgggacctccaggaagt
ccaggtcaaggatacaaaggagacccaggagaaaagggggatcttggtccagcaggactc
agaggcagtccggccgttcagtttaacgcaccagcaataagcactatcaacaaaggagag
aagggagatgtgggcctgcccggtgacccaggctgcccactggtcaatggagtggtggag
cttgttggctttccaaaaggagacaaaggaactaagggtgaaaaaggctatgatggtgct
ccaggttctacagggagaccaggaccaccaggcccatttgggaatagaggtgaaactgga
gaaaagggaatcctgggcttgccaggcttaaggggtccacctggtctgaacggtcctcct
ggccctcctgggataaaaggctttcctgggactcagggttttctgggacaaccaggtttt
actggcacaaaaggtgtcaggggagatccaggtccacctgggccgattgtggaaccagaa
gttggaattaaaggtccttcaggtgatcctggctttcctggttatccggggataactgga
gatacgggtttgccagggcttcctggtcagcctggtgctcctggagtgcctgcttctctc
acaggtcgtccaggcagcactgggttccctggtagccatggacccaaaggacagagggga
aacccaggtcagaattcttatggtcctgaaggtcttcctggaaatcagggccttcctgga
cctccaggtctccctggaccaccgggcagtacatcaaaccagttccctgctggactacct
ggttttccaggtcaccctggtccgagaggatttcctggagacagaggctttaaagggttt
aaaggagaaaatggtgactgcaactgtttgggtggaggaacaattggtgcacagggacct
caagggtctccgggggccccaggtattgcaggcctcagtggtgtgaagggagaaattggt
gatccaggcttcccaggaccccgaggtccacagggccttgatggtcgtgcaggtggaaca
ggctttagagggcgtaaaggagagaaaggtaatactttcttcccagaaggcagaggacaa
aaaggtgatatgggtcaacgaggtcctcctggaccacttggagaaagcggcaactccgga
agggatggatcgcctggcttccctggacaaccaggcccacctggggagcctggttttggc
gtgactggagataaaggttttcctggttttccagggcccaaaggtcgtcctggtgaaagg
ggcgaacctggtattggctatcctggtgtagctgggttcaaagggtcacaaggtgatcct
ggattcaatggtcttcctggaacacctggacctccaggttctccaggtgacggctgtggg
caggcggggcttaatgatgcctctttggaagagggaggaacaccactgccctgcaggatt
cctggtgaaattggagatccaggatactttggaaatcctggggtgccagggccaaagggt
aagtctggttccccaggagtgagtgggagcccagggtttgatgggccaaagggtgagaga
ggagaaccaggctctggaggtcggccaggacctgagggtttccccggacccagaggagat
ccaggtttaccaggaacaacaaatgctggcttacaagggcttccaggaagagatggtttt
ccaggtttgccaggagctaagggagaacccggtgtggtccttggggccgcccctggaggt
ccaggttctccagggagaccaggagaaccaggagacaagggtcaacctggtgcacgtggt
ttatcagggaggcttggtaatgatggacgcaacggttttcctggcataaagggagaacga
ggtgtggatggaatacctggtcgcatgggtcccataggtccaccaggagaaatccctccc
gggggtgttcctggtcccagagggccacctggagctaagggaatggatggatctccaggc
tgccaaggtttcccaggggtgaagggtatgagaggagatccaggacctccagggactggt
ggaataaagggtataccaggacctcctggcaacccagggtcacagggatttaggggacct
cctggaccccctggcattggaacacgtccaggcaaacctggaagaccaggaataaagggg
gaaaaagggtcttttggattgttggggttcccaggatttcctggttctcctggagtccca
ggtggcccaggttttaaaggtttacctggtttcgctgggcaggatggcttacctggggga
actggacaaagaggaacaaaaggggagcgtggtgctcctggtcttccaggaccctctcct
ccattcattccagtaaaggagctggaaaagggtgaaaaaggtgacccaggagttggtgga
ccgcctggtttcccaggaccaagaggtgataagggttttccagggctacctggacgtgaa
ggctttcctggatcacctggtgttgcagaccaagcaaaaggttttcctggccagcctgga
ctcccaggtattcctggctcctttggctttcctggacccaaaggttcatctggagttatg
ggcttccctggcttaccaggccagaggggtgatgatggtgtacctggggttaaagggttc
ccaggcactccaggacaaaccggtggcaaaggtgagaaaggtgattcatatgaaatatct
ggaccccctggaccaaagggtgtgattggaaatcctggattcccaggtgtttcaggactt
cctggtgaaccaggtgatccagggtccccaggagtctcgggattccaaggccagaaaggt
tttcctggagagccgggagcacgaggatttgatggctcaccaggcctcccaggcattaag
ggtctccctggttattcaggacagaaggggcgtgatggaaatccaggccgtcctggagct
ccaggttcaacaggagagaaaggttttccaggatcacctggtttacatggactcaatggt
cttcaaggatccaaggggctgcctggagttccaggtgtgactgaaggtgttcgggctgga
gctcctggtgtgaatggcctgaagggagagagaggttcatcacagcccggagcacctggg
cgtcctggagaaaaaggatccagaggagaccctggtgcccctggtttgagaggcttccct
gggaatccaggcccccctggcccgcctagtctttctaatattccaggtcctcctggagac
cctggacttccaggattagatggacgagaaggtccttttggccctcctggcctacccggt
ccaccaggccctggaacaatccaaggtgacaggggagatgctggatttcctgggcgacca
ggattaccaggaccacgtggagaacctggtggttttggagcccctggattacaaggcagt
cctggatttaaaggacaaagaggagaccctggctttagtggtgtctctggaccaccaggg
ttacctggagaaccaggatattttggcaggaatggacccaaaggattaaagggttttcct
ggttctaagggacttccaggtgttgtgttcccacctaaaataaccaacaatatgccgtct
ggggaacagggcccaccaggtcttgatgggtctgttggtcaggcaggaatgccaggcctg
ccaggcagtccaggagtcccaggtcccaaaggacctagagggccagtgggtagacttggt
cctgttggtgcagctggatctcctggaacttttggtgaccccggacctccaggaatccaa
ggacccacaggaacccaaggaacccgtggctcaccaggaatgcaaggtcttcctggttca
ccggcacgcagtaccagtatcggttatactttggtgaaacacagtcagtccagccaggtg
cccatgtgtcctcaaggcatgtccaagctgtgggatggatacagtttgctctatgtggaa
gggcaggagaaagcgcacaaccaggacctgggattgcccggctcctgcctgccacatttc
agcaccatccccttcctgtactgcacagtcagtgacatctgctactacgctagccgcaat
gacaaatcctattggctgtccaccacagcacccattcccatgatgccggtggcagatcag
cagatatctcaatacattagccgctgctcagtgtgtgaggctccatctcatgcaatcgct
atccatagccaggatctcagcataccgaactgccctcagggctggagaagtctgtggatt
ggttactccttccttatgcacacagccgcaggtgccgaaggaggcggacagtcattggtg
tctcccggttcttgtctggaggatttccgtgccacccccttcatcgaatgcaacggtgcc
cacggcacctgccactactttgccaacaagtacagtttctggttgaccacagtagagctg
aacgaacagttcatccagggtccttcccaggagacgctgaagggagttgagtaccgctca
cgcatcagtcgctgtcaagtctgcatgaagatcttgtag
DBGET
integrated database retrieval system
