Cyprinus carpio (common carp): 109072590
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Entry
109072590 CDS
T05134
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04622
RIG-I-like receptor signaling pathway
ccar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109072590
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109072590
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccar04054
]
109072590
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109072590
Pattern recognition receptors [BR:
ccar04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109072590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
SNF2-rel_dom
CARD
DUF3638
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
109072590
NCBI-ProteinID:
XP_018944365
Ensembl:
ENSCCRG00000041831
UniProt:
A0A9Q9V6P2
LinkDB
All DBs
Position
A9:27400801..27429685
Genome browser
AA seq
985 aa
AA seq
DB search
MSCDQDAETRHVLGCFRDRLKRLIQVEPLLDLLHFLEPDRKDRIKAKFREEGDINAAAFL
IDEIIHSKNYARGWSRELIAALETVGCRHAAKYVLNSPPEPTEEAENDSCVRLIDLLQLT
LVSMKTGDVCAHCRALGLLTLEDQENIMKLTENQGNIGGARLLLKRLVKNEAGWFSKFLQ
ALEDTEHHDLVRELRGEPCNEDEAVSVKTVEEGEQSCSETMPVLPPVLSANSSLLSEDLD
SSVDSSGGLCTSADNEEVDMYKEGEEEDLTEDDDPSEESKRDIVLRDYQMEVARPALEEK
NIIICLPTGSGKTRVAVYITKKHLERKKQMGQPGKVVVLVNKVPLVEQHYKAEFGRFLKH
QYSVERVSGASQLKISFPQIIEQNDIIICTAQILENSLAKAKNGDEDGIKLSQFTLMVID
ECHHTKKGGVYNHIMIRYLSQKHKNQLLKKQEKSPVPLPQILGLTASPGVGGAMNQQMAE
EHILQICANLDAFTIKTTTFKEEEAKTPYKRIARAEERKEDPFGDVIKKIMDEIHTHADL
KPLCDPGTQYYEQWVVQKEQNAAKEENQMVRVCAEHLRQYNEALHQSNTIRMSDAFRFLN
KYHTEELKTKSSPDEEGTITITDTERFLFTLFKDNKAKLQELMGKPQYENNSLAQLKTSI
LKEFSTRERARGIIFTRTRLSAIALCQWIQENPKFDEVGVRASYLIGGGDQSVVKPMTAA
EQKDVLNKFRDGQINLLIATTVAEEGLDIAECNFVIRYCLVTNEIAMIQARGRGRAEDSS
YTLVAEAGSGVAERESVNEYREKMMSTAIVKVCKMNRADYEKKTREFQMQAIIEEKVKIK
KKLLKGMMKEPPSKISLSCRQCSVFVCSGEDIEKIENMHHVNVTKQFSKLFTVRENASLQ
ERLLDYETNGVIACKNCGQQWGSMMLYKSIECPCLHIKHFVVTYSSKKKTFSKWSELPIK
FPAFDYTQHADLLVEDSEEEDLETD
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgagctgcgatcaggacgcggagacgcgtcatgtgctcggctgcttcagggacagactg
aagaggctcattcaggtcgagccacttctggatctgctgcatttcctcgaaccggatcga
aaggaccggattaaagccaaatttcgcgaggagggggacataaacgccgcggcgtttctg
attgacgagattattcactctaaaaactacgcacgaggatggtcgagggagctgatcgcc
gcgctggaaactgtcggctgcagacatgctgcgaagtacgtgttgaacagcccaccggag
cccacggaagaggccgagaacgacagctgcgtccggctgatcgacctcctgcagctcacg
ctggtcagcatgaagaccggagacgtgtgcgcgcactgccgcgcgctggggctcctgacg
ctggaggaccaggagaatattatgaagctcactgagaatcaagggaacataggtggcgct
cggctgctcctcaaaaggctggtgaaaaacgaagctggctggttttccaaattccttcag
gctctggaggatacggagcaccatgacctggtgcgtgagctgcggggagagccgtgcaac
gaggacgaggccgtgtcagtcaagactgttgaggagggtgaacagtcatgttcggagact
atgccggttctccctcccgttctctcagcaaacagctcgcttctgtcggaggatctggac
agcagtgtggacagcagcggcggtctgtgtacgtctgctgacaatgaagaggtcgacatg
tacaaagaaggtgaggaggaagatctcacagaggatgatgatccgtcagaggaaagtaag
agggatattgtactgcgtgactatcagatggaggtggcgagaccagctctggaggaaaag
aacatcatcatctgcctccctacaggaagtgggaaaaccagagttgctgtgtatatcact
aagaaacatttggagaggaagaagcagatgggacaaccggggaaagttgttgttttggtc
aacaaggttcccctggtcgagcagcactacaaggccgagttcgggcggtttctaaagcac
cagtactcagtggagcgggtcagcggagcctcgcagctcaaaatctccttcccacaaatc
atcgagcaaaatgacatcatcatctgcacagcacagattctggaaaactctttggccaaa
gccaagaacggtgatgaggacgggatcaaattatcacagttcactctgatggttattgac
gaatgccaccacacgaagaagggcggtgtgtataaccacatcatgattcgctacctaagt
caaaaacacaagaaccagctcctgaagaagcaggagaagagtccagttccgctccctcag
attctgggtctgacggcctcacctggtgtgggaggagccatgaaccagcagatggcagag
gaacacattctccagatctgtgcaaacctagatgctttcacaataaaaacaacgactttc
aaagaagaggaagccaaaacaccctacaaaaggattgcaagagcagaagagaggaaggag
gaccccttcggagacgtgatcaagaagataatggatgaaatccacacacatgcagacctg
aagcccctctgtgatcccggcacacaatactatgaacagtgggtcgtacagaaagagcag
aacgctgctaaggaagagaatcagatggtgcgcgtgtgcgctgaacatctccgtcaatac
aacgaggctcttcatcagagcaacaccatacgcatgtcagacgccttccgcttcctcaac
aaatatcacaccgaagagctcaagaccaaatccagcccagatgaggaaggcaccattaca
atcacagacacagagcgattcctcttcactttgttcaaagacaataaagcaaagctgcag
gagttgatgggaaagccgcagtatgaaaacaacagtctggcccagctgaaaaccagcatc
ctgaaggaattcagcaccagagagagagcgagaggcatcatattcacccggacccgcctc
agcgccatcgctctctgccagtggattcaagaaaaccccaagtttgatgaagtgggagtc
agagccagctatctgatcggtggaggagatcagagcgtggtgaaaccgatgactgctgca
gagcagaaggacgtgctgaacaagtttcgtgatgggcagatcaatctgctaatagccacc
actgtagcagaagagggtttggacatcgccgaatgtaatttcgtcatacgctattgcctt
gtgaccaatgagatcgccatgattcaggcccgtggtcgaggaagagcggaggacagtagt
tacacactggtggcggaggcaggatctggggtggcagagagagagagtgttaacgaatac
agggagaaaatgatgagcacagccatcgtcaaagtgtgcaagatgaatcgagccgactac
gagaagaaaaccagagagtttcagatgcaggccataatagaggagaaggtgaagataaag
aagaaactgctgaagggaatgatgaaggaaccgccatctaaaatcagcctgagctgcagg
cagtgcagtgtgttcgtgtgctctggagaagacattgagaagattgagaacatgcaccat
gtcaatgtcacaaagcaatttagtaagctgtttacagtccgagagaatgcatcactacag
gagcgactcctggactatgagaccaatggagtcattgcgtgcaaaaactgcggacagcaa
tggggctcaatgatgctgtataaaagcattgagtgtccctgcctccatatcaagcacttt
gtggtcacatacagctccaagaagaagacatttagcaaatggagcgagttgcccataaag
ttccctgcgtttgattacactcaacacgccgatctcctcgtagaggactcagaggaagaa
gacttggaaactgactga
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