Cyprinus carpio (common carp): 109073383
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Entry
109073383 CDS
T05134
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109073383
09123 Folding, sorting and degradation
03018 RNA degradation
109073383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109073383
03041 Spliceosome [BR:
ccar03041
]
109073383
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109073383
mRNA degradation factors
5'-3' decay
Lsm complex
109073383
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109073383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
109073383
NCBI-ProteinID:
XP_042591160
UniProt:
A0A9R0AAQ5
LinkDB
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Position
B12:complement(8983613..8986459)
Genome browser
AA seq
91 aa
AA seq
DB search
MAATAATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaccgcggcaacgaacccctcgcagcttttacctctcgagctggtggataaa
tgcatcggttcacgcattcacatcgtcatgaagaacgataaagagatcgtgggaactctg
ctcggatttgatgacttcgtcaacatggttcttgaggatgtgacagagtttgaaatcact
ccagaaggaagaagaatcacaaagctggatcagattctactcaatggcaataatatcaca
atgttgattccaggaggagaaggaccagaagtttaa
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integrated database retrieval system
