Cyprinus carpio (common carp): 109074196
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Entry
109074196 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG9-like
KO
K18735
protein SMG9
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109074196
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109074196
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_16
AAA_30
MMR_HSR1
DUF6079
AAA_18
Motif
Other DBs
NCBI-GeneID:
109074196
NCBI-ProteinID:
XP_018945793
UniProt:
A0A9Q9V738
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Position
8:6889532..6894111
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AA seq
491 aa
AA seq
DB search
MSESGHSQPGMYGQGRRRRRRRDRDPGPPAQNLSGPSRDRDYVPRERRDGSEEPTGPLLQ
KTPIILAKPPGERSKPSVPASGAPSLEKPIMLIKTRDEGGKPGNPPDVAPSVSGAGTAKL
EREGQRPTQPVYQIQNRGMGSAASGGAVDPVIGQTKLLPPEKMKHSIKLVDDQMNWCDSA
MEYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANSPEEDQRAYVFRAQTQEIKERAGNQSS
GIDFYITQERVIFLDTQPILSPSILDHLINNDRKLPPEYSLPHTYVEMQSLQITAFLFTV
CHVVIVIQDWFTDINLYRFLQTAEMLKPSTPSASHDSTGSSGADDGSEYYPHIVFLQNKA
RREEFCPRNXSHLKYKGTLSMLDCNIFPGLNRDYLETEVNLFLLPMMENDGEDALTRAGS
GPPLFSLLPGYRGHPSFSSLVSKFRSQILAMSRSQLSHTILTEKNWFHYAARIWDGVKKS
SALSEYSRLLS
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtcgggtcacagtcagcccgggatgtacggacagggacggaggaggcggcga
cggcgagaccgagacccgggaccacctgctcaaaacctctccggacccagtcgagatcga
gactatgttccccgtgagcgcagggatggcagcgaggaacccacaggacctcttctacag
aagactcccattatccttgctaagcctcctggagagcgatccaaaccaagtgtgccagca
agtggagccccatctttggaaaagccaatcatgctcattaaaaccagagatgaagggggg
aagcctgggaaccctcctgatgtggctccttcagtctcaggtgcaggaactgccaaactg
gagagggaaggccagcggccgacccaacctgtgtatcagatccagaacagaggcatgggc
tcagctgcatccggtggagctgtggatcctgtgattggccagactaagctcctcccccct
gagaagatgaagcacagcattaagctagtggatgaccagatgaattggtgtgacagcgct
atggagtacctgcgagaccagacggatatgttagtagttggggttattgggctacaaggc
acaggcaagtccacaatcatgtctctcctgtctgcaaacagccctgaggaggaccagagg
gcgtatgtgttcagagctcagacgcaggaaatcaaggagagagctgggaaccagagcagt
ggaatcgatttctacatcactcaggagagggtcatctttctggacacgcagccaatttta
agcccctctattttggatcatctcattaacaatgaccgcaagcttcctccggaatacagt
ctcccacatacatatgtggagatgcagtctctgcagatcactgccttcctctttaccgta
tgccatgttgtgattgtgattcaggactggttcactgatatcaacttatataggtttctg
cagactgccgagatgctgaaaccctcgactccatctgccagtcatgacagcaccggctcc
tcaggggcagatgatggctctgagtattatcctcacatagttttcttgcagaacaaagca
aggagggaggagttctgtccacggaatnnctcccacctaaaatataaaggcaccttatcc
atgctggattgtaacatattcccaggactgaatcgagattatttggagacagaagtcaat
cttttcctcttacctatgatggagaatgatggggaagatgctttgacaagagcaggttca
ggtccccctcttttctctctgctgcctggttacagagggcatcccagcttttcttcactg
gtttctaaattccgcagtcagatcttggctatgtcccgcagtcagctctcacacacaatc
cttactgagaaaaactggtttcattatgcggctagaatttgggatggtgttaagaaatca
tctgcgctctctgaatatagccgactactgtcatag
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