Cyprinus carpio (common carp): 109075154
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Entry
109075154 CDS
T05134
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K08127
epiphycan
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccar00535
]
109075154
Proteoglycans [BR:
ccar00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
109075154
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_9
LRRNT
Motif
Other DBs
NCBI-GeneID:
109075154
NCBI-ProteinID:
XP_042596253
Ensembl:
ENSCCRG00000001026
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Position
A4
Genome browser
AA seq
726 aa
AA seq
DB search
MITLRLMWGLLVLCVVAASPRRYARQAELDNYGNNNVDLDLNEDGDDVYDYYNGIDEPQI
EIGTLSPDEDIDPSHHASLEEEEEEEVEHEKRRTVEGREDKELPIKPQLIPSGFGESGTL
MGPSAQGEEELRLTPIDILQISGDISGSGELSSGDLLDDKASGSGKPLGSGGSGASGDIS
GSVDSEDLGSGVSGLSGSGIILISGREEELHLTLETIPHEASGDFWESGVSALPEVSGEP
SATVVLEVFGEPVTSGVLEILGNPGATGVPELSGEFEASGVPEVSGESGASGVPEVSGES
GVSGVPEVSGESGVPEVSGEPGASGVPEMSGELGLSGVPEVSGESGTSGEPEVSGESGIS
GMNEVPGESGISGMNEVSGESGISELNEVSGESGTSGVPEVSGEPVISGGPELSGESEFS
VVPEVSGEPGTFDLFGESGVPEETKQPEVTFESGESGSPEESGVTEAPVVTTEILIPDLD
EEEEILLTTPTTPLEGAGGDIGSGIPDTDKDIETDTTGMATCMLCTCLVGSVYCDDLKLD
RVPPLSKETTHFYARYNKIAGISKSDFANLNKLKRIDLTSNGISRIEDDAFFGLPALEEL
ILRENSIRQLPALAPSMTLIDASHNQLGSTGIQREAFKDMSGLLYLYLTDNNIDHIPVPL
PDSLRSLHLQNNNIQMIHEDTFCNPHDLNYIRNSLEDVRLDGNPINLSRTPQAYICLPRI
PVGALI
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgataacgctgaggttgatgtggggactcctcgtcctgtgtgtggtggcagcctctccc
cgcagatatgcccgacaagcagaactagataactatggcaacaacaatgtggatttagac
ctgaatgaggatggtgatgatgtctatgactattacaatggaattgatgaaccacagata
gagattggcaccttgagccccgatgaggatattgatccttcacaccatgcctcattggag
gaggaagaagaggaggaggtggagcatgaaaaacggaggacagttgaggggagagaagac
aaggaattacccataaagcctcagctgattccatcaggctttggggagtcagggactctg
atgggccctagtgcacagggagaggaggagcttcgtctgacgcccattgacatccttcag
atttctggggacatttcgggttctggtgaattgagctctggagacttacttgatgacaaa
gcttccggttctggaaagcctttgggctctggaggttctggggcctctggtgacatatca
ggttctgtggactcagaggaccttggttctggagtctctgggctttctggttcaggcata
atattgatctcaggtagagaggaggagctccacttgacgcttgaaaccattccacacgag
gcctctggggatttttgggagtctggagtttctgcattacctgaggtgtcaggagagcct
tcagccactgtggttcttgaggtatttggagagcctgtgacttctggggtacttgagata
ttaggcaatcctggggccactggagtacctgagctgtcaggagagtttgaggcttctggg
gtacctgaggtgtcaggagagtctggggcctctggggtacctgaggtgtcaggagaatct
ggggtctctggggtacctgaggtgtcaggagaatctggggttccagaggtttcaggagag
cctggggcctctggggtacctgaaatgtcaggagagttggggctctctggggtgccagag
gtatcgggagagtctgggacctccggggagcctgaggtgtctggagagtctgggatctct
gggatgaatgaggtgcctggagagtctgggatctctgggatgaatgaggtgtctggagag
tctgggatctctgagttgaatgaggtgtctggagagtctgggacctccggggtgcctgag
gtgtctggagagcctgtgatctctgggggccctgagttgtctggggagtctgagttctct
gtggtgcctgaggtgtctggggagcctggaacctttgatttgtttggagagtctggggtc
cccgaagagactaaacagcctgaggtcactttcgagtcaggagaatctgggagcccagaa
gagtctggggtgactgaggccccagtcgtcaccactgaaatattaatacctgacttagat
gaagaggaggagatactcctaactaccccgaccactcccttggagggggctgggggtgat
atagggtcagggatacctgatactgacaaagatattgaaacagatacaacaggtatggct
acctgtatgctctgcacctgcctggttggatctgtgtactgtgatgaccttaagctggac
cgtgttcctcccctctccaaagaaaccactcatttctatgcccgctacaacaaaattgct
gggatcagcaagtctgacttcgccaacctgaataaattaaagaggatcgatctgactagc
aatggcatttccaggatcgaagatgatgctttctttggccttcctgctctggaggagttg
atattacgagagaatagtattagacaacttcctgctctagcaccctctatgacccttatt
gatgcctctcacaaccagttgggcagcactggcattcagagagaagctttcaaggacatg
tcggggctactttacctttacttgacggacaacaacatagaccacatcccagttcctttg
cctgacagcctgcgctctctgcacctacagaataataatatccaaatgatacacgaggac
accttctgcaatccgcatgacttgaattacatccgcaactctcttgaagacgttcgcctg
gacggtaatcccatcaacctaagcagaaccccgcaggcctacatatgtttgccacgtatc
cctgttggtgcccttatttaa
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