Cyprinus carpio (common carp): 109076981
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Entry
109076981 CDS
T05134
Symbol
atg16l1
Name
(RefSeq) LOW QUALITY PROTEIN: autophagy-related protein 16-1
KO
K17890
autophagy-related protein 16-1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04136
Autophagy - other
ccar04140
Autophagy - animal
ccar04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109076981 (atg16l1)
04136 Autophagy - other
109076981 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109076981 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109076981 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ccar03029
]
109076981 (atg16l1)
Membrane trafficking [BR:
ccar04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
109076981 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
109076981 (atg16l1)
Mitochondrial biogenesis [BR:
ccar03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109076981 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
KASH_CCD
PUMA_CC
DUF6212
PspA_IM30
ADIP
DUF4200
Mobilization_B
DUF4472
NET2A
Crescentin
Docking
Fez1
Motif
Other DBs
NCBI-GeneID:
109076981
NCBI-ProteinID:
XP_042627680
UniProt:
A0A9Q9YXQ4
LinkDB
All DBs
Position
A15:complement(24320639..24332913)
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AA seq
406 aa
AA seq
DB search
MAGRRVECLWKHHVVEQLKQRDRVQRQAFEEIIHQYNRLFREVXSSGCFFSEHLQTEKYE
QQNRHDLSPGVEGGRSDSLQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQQKDK
EIQSNEAKMMVYYQQVFYLVGEGRELRNSLADLERANQTLRDEYDALQITFSALEEKLRK
TTEDNQELVTRWMAEKAQEANKLNAENEKDSRSQTHSIWMLLKYAFFCTRFKVLMFVNDV
VNGSYMCVSRTLSISILWMLFSGWCRDDDIEVLTEDAGKGTGGAGETSPSRQSSRTPSRR
ASQPPPPAGLLDSISTIFGLSDSVQPGFVPSDSRRRSVNSFSSSPEGAEVPSACADVRVP
STALHVFDAHDGEVNAVRFRSPGCPSACHWRPDVNLKVALTRGVML
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgggacgtagagtcgagtgtttgtggaaacatcacgtcgtggagcagctgaagcag
agagacagagttcagcgtcaggcctttgaggagatcatacaccagtataaccggctgttt
agagaagtctgatcttcgggttgttttttttctgaacatctccagaccgagaaatatgag
caacagaacagacacgacctcagtccgggcgtcgagggcggccgcagtgactccctgcag
caggaaatggctcagatgagaatcaaacatcaagaggagctgacggagctgcacaagaaa
cgaggagagttggcccagagcgtgattgaactaaacaaccagattcagcagaaagacaaa
gagatccagagtaatgaagccaaaatgatggtgtattatcagcaggtgttttatcttgta
ggagagggtcgcgagctccgcaactctctggccgatctggaacgagccaatcagacgctg
cgagatgagtacgacgccctgcagatcacgttcagcgccctggaggagaaactacggaaa
accacagaggacaatcaggagctggtgactcgctggatggccgagaaagcgcaggaggcc
aacaaactcaacgctgagaacgagaaggactccaggtcacaaacacattcaatctggatg
cttctaaaatacgctttcttttgtactcgctttaaggtcctcatgtttgtaaacgacgtc
gttaacggctcgtatatgtgtgtgagccgaacactctccatctcaatcctctggatgctg
ttttctggttggtgtagagatgatgacatcgaagttctcacagaggatgctgggaaggga
acgggtggagcaggtgaaacgtcaccgagcagacagtccagtcgcacacccagcagacga
gcgtctcagcctcctcctcctgctggactgctggattccatctctactatctttggcttg
tctgattctgtccaacctggtttcgtcccatcggactccaggcgtcgctcggtgaattcg
ttcagctcgtctcctgaaggcgcagaggtgccttcggcctgcgctgatgtccgagttccc
tccactgcgctccacgtctttgacgcccacgatggagaagtgaacgcggtgaggtttagg
tctccaggttgcccgtctgcttgccactggaggcctgatgtgaacctaaaggttgcgctg
accaggggagtaatgctgtaa
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