Cyprinus carpio (common carp): 109079904
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Entry
109079904 CDS
T05134
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109079904 (si:ch211-114c17.1)
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109079904 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_11
TPR_15
DUF5858
TPR_12
Motif
Other DBs
NCBI-GeneID:
109079904
NCBI-ProteinID:
XP_042594155
UniProt:
A0A9Q9X2Z3
LinkDB
All DBs
Position
B14:14831148..14841051
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AA seq
723 aa
AA seq
DB search
MRRTLYASFVVWSIMAAEGTEDLGNNGQLTNPSELYEPEAADLPKTDVKESAERGADGGD
TGVPTTPYTAEGEEEEEGEMPADFQRLWKLTSDNPQDFNSWTDLLQYCEQEGHMRACRQA
LNAFLLRYPLCYGYWKKFADLERRAGHVNKAEEVCERGLKAIPLSVDLWIHYINLLLGTL
NMNLPESTQRIRSVFEEAVAVAGWDFHSDRLWDLYAEWEKEQGNLNFMTGVYDRVLRVPT
QFYNTHYEKLKAHLTSHPPQDVLSPEEYSKVRNECKQSQIQAKKERSDISAEEEERPPGE
EEPADNGKDSEEAVQKMQELLMVSREELYQQNEAEVRKRWNFEDAIKRPYFHVKPLDRAQ
LKAWQSYLDWEIAEAETAAVDAEGAAVEGNEGSKQERVAGHNRVLILFERCLIACALYEE
FWNKYVHYLAPHGLEEVRNVYRRACEIHLPYKHSIHLQWASFEEKHGIISEANPIQKTLH
ITAPVLAYENIRRGGLERRAGRLDVAEALLKETVEQSKDNPPLHAFYSIKLARFLHKLCK
SPSRARTVLQEAIELSPDNGRLYHNLLELEMSGDLRSNGGGILQCVAKAVAAPLSPKTKI
LFSQRGLQFAEDFGTTVQSVLSMYEEHQKLLKEHDAKRQAEHGDNGDTEKMSKMDDASAL
TVPQTAPPTMPHVPMTTPPPSMMGGDMSGSYGSYGSWYQQQQYGGYGSYQNPWNQYNQYY
PPS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcactttatatgcgtcatttgttgtgtggtcaataatggcggcagaaggcaca
gaggatctgggcaacaacgggcaactcacaaacccttcagagctttatgagcctgaggct
gcagacctccccaagacagatgttaaggaatcagcagagaggggtgcagatggaggagac
accggcgtcccgacaaccccctacacagccgaaggagaagaggaggaagagggagagatg
cctgcagacttccagagactttggaaacttaccagcgacaatcctcaagatttcaacagc
tggactgacctcctgcagtactgtgaacaagagggccacatgagagcttgccgtcaagcc
ctgaatgcgtttctgctgcggtatcctctgtgttacggttactggaaaaagtttgcggat
cttgagagacgggccggtcacgtcaataaggctgaagaggtgtgtgaacgaggtttgaag
gcaatccctctcagtgttgatctctggattcactacatcaacctgctgctgggaacgctc
aacatgaacctgcctgagtcaacacagcgcatccgcagtgtgtttgaggaggcagttgca
gtcgctggctgggacttccattcagacaggctgtgggatctgtacgccgagtgggagaag
gagcagggcaacctgaatttcatgaccggcgtctatgaccgagtactgagggtccccaca
cagttctacaacacacactatgaaaaactgaaagctcatctaacctcccacccgcctcag
gatgtcctgtcccctgaggagtacagtaaggtgaggaatgagtgcaaacagagccagatt
caagccaagaaagagagatctgacatcagtgctgaagaagaagagagaccgcctggggag
gaagagcctgcagacaatggcaaggactcggaagaagcagtgcagaagatgcaggagctc
ctaatggtcagccgagaggaattgtaccaacaaaatgaagcagaagtcaggaagagatgg
aactttgaagatgctattaaaaggccttatttccatgtgaagcctctggatagagcccag
ctgaaagcctggcagagctatctggactgggagattgcagaagctgaaaccgcagcagtg
gatgctgaaggggcggctgtggaaggcaatgaaggctcaaaacaagagcgtgtagctggg
cacaatagagtgctaattctgtttgaacgctgtctcattgcttgtgcgctctatgaggaa
ttctggaacaaatatgtgcattacctggcaccacacgggctggaggaggtgcgtaatgtg
taccgcagagcttgtgaaatccatcttccatacaaacacagcatccaccttcagtgggct
tcatttgaggaaaaacatggtattatttcagaggcaaatccaattcaaaaaacacttcat
attacagctcctgttctggcttatgagaatataagaagaggaggcctggagcggagagca
ggacgtttggatgtggcggaggctctgctgaaggagacggtggagcagagtaaagacaat
cccccactccatgccttctactccatcaaactggctcgctttctacacaagctgtgcaag
agcccttccagggcccgcactgttctacaggaagccatagagctgagtccggataacggt
agattgtatcacaaccttctggagctggagatgtcaggtgacctgcggtctaatggaggt
gggattctgcagtgtgtggccaaagccgttgctgctcctctctccccaaagaccaaaatc
cttttctcccaacgtggcctgcaatttgctgaggactttgggaccacagtacagagtgtg
ttgagcatgtatgaagagcaccagaaactgctgaaggaacatgatgcaaagagacaagca
gagcatggcgataacggtgatacagaaaagatgagcaaaatggatgatgcatcagccttg
acagtgccacagacggctccacccacaatgcctcatgttcccatgacaacgccacctccc
tctatgatgggcggagacatgagtggatcatatgggagttatggcagctggtatcagcag
caacagtatggagggtatggcagctaccagaacccgtggaaccagtacaatcagtactac
cctcccagctaa
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integrated database retrieval system
