KEGG   Cyprinus carpio (common carp): 109080730
Entry
109080730         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 7
  KO
K24738  rabconnectin-3b
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    109080730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccar04131]
    109080730
Membrane trafficking [BR:ccar04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    109080730
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 WD40_Gbeta WD40 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_SCAP Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_WDR41 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N ASA1 Beta-prop_VPS8 WDR72_alpha-sol WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th PAC11 Beta-prop_WDR19_1st KH_KRR1_2nd Beta-prop_WDR11_2nd Tricorn_2nd
Other DBs
NCBI-GeneID: 109080730
NCBI-ProteinID: XP_042603761
Ensembl: ENSCCRG00000013668
LinkDB
Position
B21:complement(2531783..2641147)
AA seq 1439 aa
MSGNSLVLPIVLWGRNAPTHCISSLLVMDDLATIITGCHDGQICIWDMTPELEINPRALL
FGHTASVTCLSKASAGSDKQYLVSQRKARERXEMCLWDVNDGRCIEFTKLACAHTGIQFY
QFNIGTQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIRSHRTQEDTV
VAVSVTGILKVWIITADVSRMQDLDPVFEEESKPIYCQGCQSISFCTFTQLSLLVVCSKY
WRVFDAGDFSLLCSVPSENNQSWVGGEFIAADKVIIWTEDGCSYIYKLPASCLPASEHFR
SNVGKKTEGSIPPLVYSIADRADKQLLICPPVTRFFFGRREPFHKLLIQGDSAGRLTLQP
LSSAAELQVSVSISLQEAFDKLMPSPAGIIDQLSVLPGSNEPIKVTASVYIPIRARLVCG
THAAQGXHSLTDISITXXKKVQLLQGEHMLRRGWPPHRTLRGHRHKVTCLLYPHQVSPRY
DQRSLVSGGVDFSVIIWDIFTGEMKHIFCIHGGEITQLIVPPENCSTRVQHCVCSVASDH
SVGLLSLRERKCIMLASRHLFPIQVIKWRRGGVIIWWLCCLYVCVSGALDRCVMGITAVE
ILNACDEVVPAAMDSLNHPAVNLKQAMTRRSLAALKNMAQHKLQTLATNLLAADNADKGN
LPKYSHNSLVVQAMKTNVTDPDMHVLFFDVEAVIIQLLTEEAQRPNPTLVSPETLQKAPG
GADKGGSFLANKIFKQVKETIKENIKEHLLDEDEDEEEEQRRREEKSKSLSLLEYNLTMD
TAKLFMSCLHAWGLNGELDEVCLTRLGMLRPHTPVSFGLISRGGHMSLMLPTFKDSLLRQ
LAEGCADGRKLSVSEIVGKGTYGVSRAVTTQHLLSVISLANTLMGMTNATFIGEHMKKAP
ARPPRPGTPETPRKTTPQASSPALQAQIKQGWSQLAAMHCVMLPDLLGLDKFRPPLLEML
ARRWQDRCLEVREAAQALLLAELRRIGQSGRKDTIDMWAPYLPQYVDVVSSPGTAPESGQ
PAPPPAEAPPTETKAPEEEMDVTDDDITAGCLSNLPPNAKICNSYEERRKQATAIVLLGV
IGAEFGAEIEPPKLPSRARTSTQAPDGFGLTTGGSNYSLARHTCKALTFLLLQPPSPKLP
AHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLSNISMGLPLSPGADSA
RSARHALSLIATARPPAFITTIAREVHRHTAMQSQGSQSQQNVHTTTLARAKTEILRVME
ILIEKMPSDVVDLLVEVMDIIMYCIEGSLVKKKGLSECFPAICRFYMVAYCDRSYRIAVG
ARQGSVALYDVRTGKCQHIHGHKGPITAVSFAPDGRYLHTHQNSQTHISVSQMNTSLLGS
IGMLNSAPQLRCIKTYQVPPVQPASPGSQNALKLARLIWTSNRNVILMAHDGKEHRFMV
NT seq 4320 nt   +upstreamnt  +downstreamnt
atgtcaggaaacagtctggtattacccatagttctgtggggccgcaatgcgcccactcac
tgcatctccagcctgctggtgatggacgatctggccaccatcatcaccggctgccatgat
ggacagatctgcatctgggacatgaccccagagctggagatcaatcctcgtgctctgctg
ttcggacacacggcttctgtcacctgtctgtccaaggccagcgcaggaagtgacaaacaa
tacctcgtctcccaaagaaaggcgagagagagataggaaatgtgtttatgggacgtcaat
gatggacgctgtattgagttcaccaaactggcctgtgcacacactggaatacagttttat
cagttcaacatcggcacacagagggagggccgtcttctgtgtcatggacattacccagaa
atccttgttgtggatgctaccagtctagaggttctctactcgctcgtgtccaagatttcg
cctgactggatcagttccatgagcatcattcgctcgcaccgcacgcaagaggacaccgtg
gtggctgtgtctgtcactgggattcttaaggtgtggatcatcaccgctgacgtcagcagg
atgcaggatctggaccctgtttttgaggaagagtcgaagcccatctactgtcagggctgc
cagagcatctcgttctgcacgttcacacagctctcgctgctggtggtgtgttcgaagtac
tggagggtgtttgatgcgggtgatttctccctgctgtgttcggtcccgagcgagaacaat
cagtcgtgggttggaggagaattcatcgctgctgataaagtcataatctggactgaagat
ggttgcagctacatttacaaactgccggccagctgtctcccagcgagcgaacacttccgc
agcaatgtggggaagaagacggagggttcgatccctcctctggtgtacagtatagcggac
cgcgccgacaaacagctcctgatttgtcctcctgtgacgcgcttcttcttcggacggaga
gagccgttccacaaactgctgatccagggcgactccgcggggcgactgacgttacagccg
ctgtcctccgccgcagagctgcaggtgtcggtcagcatcagtctgcaggaggcctttgat
aagttaatgccgtctccggccggcatcattgaccagctgagcgtcctgcccggctctaac
gagcccattaaggtgacggcgagcgtgtatatccctatcagggcccgcctggtgtgcgga
acacatgctgcgcaggggtgacacagtcttactgatattagtataacataataaaaaaaa
gttcagctgctgcagggagaacacatgctgcgcaggggctggcctcctcatcgcactctc
agaggtcacaggcacaaggtgacgtgtctgctgtacccacaccaggtctccccgcgctac
gatcagcgctcgctggtgtccggcggcgtcgacttctccgtcatcatctgggacatcttc
accggcgagatgaagcacatcttctgcattcacggaggagaaatcacacagctgatcgtg
cctccggaaaactgcagcacgcgcgtgcagcactgcgtgtgttcggtggccagcgatcac
tccgtcggtctgctgagtctgagagagaggaagtgcatcatgctggcgtccagacatctc
ttccccatccaggtcatcaagtggaggcgtggtggagtgattatctggtggttgtgttgt
ttgtatgtgtgtgtttcaggagcgctggaccgctgtgtgatgggaataacggcggtggag
attctgaacgcgtgtgatgaggtcgttcccgccgctatggactccctcaatcaccccgcg
gtgaacctgaagcaggccatgacccgccgcagtctggctgcgctcaagaacatggcccaa
cacaagctgcagacgctcgccaccaacctgctcgcggccgacaacgccgacaagggaaac
cttcccaaatactcgcacaactctctggtggtgcaggccatgaagaccaacgtgacggat
ccggacatgcatgtgctgttcttcgacgtggaggccgtgatcatccagttactgacggag
gaggcgcagcggcccaatcccaccctcgtctcaccagagacgctgcagaaagcaccagga
ggagccgacaagggcgggtccttcctagccaataagatcttcaaacaggtgaaggagacc
attaaagaaaacatcaaggagcacctgctggatgaagacgaggatgaggaggaggagcag
cggcggcgcgaggagaagtccaagtctctgagtctgctggagtacaatctgaccatggac
acggccaaactcttcatgtcctgcctgcacgcctggggtctgaacggagagctggacgag
gtgtgtctgacccggctgggcatgctccgcccgcacacgcccgtctccttcggcctgatc
tcccgcggaggacacatgtctctcatgctgcccaccttcaaagactcgctgctccggcag
ctggccgaaggatgcgccgatggccgcaagctctccgtctccgagatcgtgggcaaaggc
acgtatggcgtctccagagccgtgaccacgcagcacctgctctccgtcatctcgctggcc
aacacactgatgggcatgaccaacgccaccttcatcggggagcacatgaagaaagcaccg
gcaaggcccccaagaccaggaacccctgagaccccgagaaaaaccaccccgcaggcctcc
agcccggccctgcaagcacagatcaaacaaggctggagtcagctggccgctatgcattgt
gtcatgcttcctgatcttctgggtttggataagttcaggcctcctctactggagatgttg
gctcgcagatggcaggaccgctgcctggaggttcgagaggctgcccaggcgctgctgttg
gctgaactgcggcggatcggtcagtcgggccggaaggacaccattgacatgtgggcgccg
tatctgccgcagtatgtggacgtggtcagctctccgggaaccgcccccgagtccggccag
ccggccccgccccctgcagaagccccgcccaccgagaccaaagctccagaggaagagatg
gacgtgacagatgatgacatcactgcaggttgtctgtcgaacctgccgccgaacgcgaag
atctgtaactcgtacgaggagcgcaggaagcaggcgacggccatcgttctgctgggagtg
atcggagctgagttcggcgcagagatcgaacctcccaaactaccttcccgcgcccgcacc
agcactcaggctcctgacggattcggtctgaccaccggaggatccaactactcactggcc
cgacatacctgtaaagccctgacgttcctcctcctccagccgcccagccccaagctgccg
gcccacagcaccattcggcgcacagccatcgatctgatcggccgcggcttcacggtttgg
gagccgtatatggacgtgtccgcggttctcatgggtctgctggagctctgcgccgacgcc
gagaagcagctgtccaacatctcaatgggtcttcctctgagccccggcgctgactcggcc
cgatcggcccgtcacgccctctccctgatcgccaccgccagaccgcccgccttcatcacc
accatcgctcgagaggttcacagacacacagcgatgcagtcccagggctctcagtctcag
cagaacgttcacaccacgactctcgctcgcgccaaaactgaaatcctgcgcgtcatggag
attctcatcgagaagatgccgtctgatgtggtggacctgctggtggaggtgatggacatc
atcatgtactgcattgaaggctctctggtgaagaagaaaggcctgtccgagtgtttccca
gccatctgcaggttttatatggtggcgtactgtgatcgcagctatcgcatcgctgtcggc
gcccgtcagggttcagtggctctttatgacgttcgcactggaaagtgccagcacattcat
ggacataaaggacccataacggcggtgtccttcgcaccggacggacgatatctccacaca
caccaaaactcacagacacacatctctgtgtctcagatgaacacgtctctgttgggcagc
atcgggatgttgaactcggctcctcagctgcgctgcatcaaaacctatcaggttcctccg
gtccagccggcgtcgcccggatcccagaacgccctcaaactggcccgcctcatctggacc
tccaaccgcaacgtcatcctcatggcccacgacggcaaggagcaccgcttcatggtctga

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