Cyprinus carpio (common carp): 109081461
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Entry
109081461 CDS
T05134
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04120
Ubiquitin mediated proteolysis
ccar04137
Mitophagy - animal
ccar04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109081461 (prkn)
04120 Ubiquitin mediated proteolysis
109081461 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
109081461 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109081461 (prkn)
04121 Ubiquitin system [BR:
ccar04121
]
109081461 (prkn)
03029 Mitochondrial biogenesis [BR:
ccar03029
]
109081461 (prkn)
Enzymes [BR:
ccar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
109081461 (prkn)
Membrane trafficking [BR:
ccar04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
109081461 (prkn)
Aggrephagy
Other aggrephagy associated proteins
109081461 (prkn)
Xenophagy
Other xenophagy associated proteins
109081461 (prkn)
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
109081461 (prkn)
Mitochondrial biogenesis [BR:
ccar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
109081461 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD_2
Dsc3_N
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
109081461
NCBI-ProteinID:
XP_042592269
UniProt:
A0A9R0AB74
LinkDB
All DBs
Position
B13:complement(8065722..8183825)
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AA seq
457 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEQGASVAELKETVGRLQGVQPDRLRVIFAGRELCNESTLQGCD
LPEQSTVHVVLPPSTSSQHSELVQQHRPGGGMESLTRLDLSGSRLTSVSEGLAVILETDA
SRQGNFIGHTEVKAHSSFYVFCKTVCKAIQPGKLRVRCRDCKQGTLTLSRGPSCWDDVLL
PNRIHGVCQSQDCDGTVAEFYLKCAAHPTCDNDTSAALDLIMPNTRRVPCIACTDIMTPV
LVFQCAERHVICLECFHMYCVTRLNERQFIQEPLVGYSLPCAAGCPDSLIKEVHHFRVLG
DEQYERYQRYAAEECVLQMGGVLCPAPGCGAGLLPVDDGRRVCCELGNGLGCGFVFCRDC
KAEYHEGPCRQRTHTATGSALQGYIVDEEAALRARWEQASQETIAETTRPCPKCQVPVEK
NGGCMHMVCPRPQCKYEWCWLCRVEWNRECMGNHWFG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtatatgtgcggtttaactccagccacgggttcccggtggaactggaacagggt
gcgagtgtagctgagctgaaagagacggtgggacgtttacagggagtacagcctgatcga
ctgcgggtcatctttgctggacgagagctctgcaatgaatccacacttcagggctgtgat
ctccccgagcagagcacggttcatgtggttctgccaccatccacctcgagccagcactct
gagttggtccagcagcacaggccgggcggggggatggaaagcttgacccgacttgacctc
agtggctcccgtctgaccagtgtgtctgaaggcctggctgtcattctggagacagatgcg
tccagacaagggaacttcattggacacacagaagttaaagcccacagcagtttctatgtg
ttctgtaagacggtctgcaaggccattcagcctggaaaactacgtgttcgctgcagagac
tgcaaacaaggcactcttactctcagcagggggccaagctgctgggatgacgtcctactc
cctaacaggattcatggagtatgtcagtcacaagactgtgatggcacagttgcagagttc
tacctgaaatgtgctgcccaccccacctgtgataatgacacttcagcagcactggacttg
ataatgcccaacacacgcagagtgccctgcatcgcctgcactgacatcatgactccagtg
ctggtgtttcagtgtgccgagcgtcacgtgatctgcctggagtgcttccacatgtactgt
gtgaccagactcaatgagcgacagtttatccaggagccgctggtgggctactctctgccc
tgtgcagccggctgtcctgattcgctcattaaagaggttcatcatttccgagtcctggga
gatgagcagtatgagcgctaccagcgatacgcagcggaggagtgtgttcttcagatggga
ggagttctgtgtcccgctccaggatgtggtgccgggctgcttcctgtggatgatggcagg
agagtctgctgtgagttggggaatggacttggctgtgggtttgtgttttgcagggactgt
aaggcagagtatcacgagggcccctgcagacagaggacacacacggcaacaggaagtgcc
ctacagggttatattgtagatgaagaggcagctcttcgtgctcgctgggaacaggcctca
caggagactatagcagaaaccactcgcccctgccccaaatgccaagttcctgtggaaaaa
aatggtggctgtatgcacatggtgtgtccgcgtccccagtgtaagtatgaatggtgctgg
ctctgtcgtgtggagtggaacagagaatgcatgggcaaccactggttcggatga
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