Cyprinus carpio (common carp): 109081598
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Entry
109081598 CDS
T05134
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109081598 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109081598 (prpf38b)
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109081598 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
109081598 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
109081598
NCBI-ProteinID:
XP_018952129
Ensembl:
ENSCCRG00000030355
UniProt:
A0A8C1ISP9
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Position
B2:complement(25872825..25878807)
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AA seq
473 aa
AA seq
DB search
MAVSQQQQQQQAVSKPAGGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVNHMEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQVMGLITHTDSPYIRSLGFMYIRYTQPPSDLVDWYDEFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPAQKAIDQHMKSRPRKPPQKDEQDEEEAADSGRHGDRRR
SRTPRKSPSPRISQNRSRSRSHHREKQSAGFDRELERERDRQRKEREGKDRDRERDRDRD
RDRRRSRTPDRTRERRRSRSASREKRKERDAESERERSRRKDREHHKDHERSKDKRSKGE
GEERRHKEDKEDRKHREEKRSKRSRSRSRDRKHKTERSSKRRSRSGSRSRQEAGEERNRK
RERSHSKERSHKRSRSKERSHRRESSNGREHVKHERPSPEKGERTNSVRVESP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcggttagtcagcagcaacaacagcagcaggccgtgagcaaaccggccggcgggaaa
cacggtaacgtcttgccgttatggggcaacgagaagactatgaacctcaaccccatgatc
ctgacaaacgtcctgtcgtcgccgtacttcaaggtccagctgtacgagctcaagacgtac
cacgaggtggtggacgagatttacttcaaggtcaaccatatggagccatgggaaaaaggc
agcaggaagaccgcggggcagacgggaatgtgcggaggggttcgaggagtcggtacgggt
gggattgtgtccactgcattttgtttgctgtataagctatttacactgaaactgacccgc
aaacaagtgatgggtctcatcactcacacagattcgccctatatcaggtcactgggcttc
atgtacatcaggtatactcaacctccttctgacttggttgactggtatgatgagttcctt
gacgacgaggaggagttggatgtgaaggctggaggagggtgcgtaatgacgatcggagag
atgcttcgctccttcctgaccaagctggaatggttttcaacgttgttcccacgaatacct
gttcctgcacagaaagcaatcgaccagcacatgaagagccgaccacgtaaacccccgcaa
aaagatgagcaggatgaagaggaggcagccgattcgggaaggcatggagataggcgccgt
tccaggacacctaggaaaagtcccagtcccaggatatcccaaaatcgttcacggagtcgc
agccatcacagagaaaaacaaagcgccggcttcgaccgcgaactggagagagaacgagat
cggcagcgtaaagaacgggagggaaaggaccgggatagagagagggacagggatagagac
agagatagacgacgctccagaacaccagaccgaaccagggaacgacgccggagtcgcagc
gccagtcgagagaagcggaaagagagggatgcagagagtgaaagagagcgtagtcgcagg
aaagacagagagcaccataaagatcatgagaggtccaaagacaagaggagtaaaggagag
ggggaagagaggaggcacaaggaagataaggaggatagaaaacacagggaagaaaagaga
agtaaacgatcaaggagcagaagcagagacaggaaacacaaaactgaacgatctagcaag
aggcgctcccgctcgggcagcaggagcaggcaggaagcaggggaggagaggaacaggaaa
agggaacgcagccatagtaaggaacgctcacacaaacgcagtcggagcaaagagcgctcg
caccgacgagaatccagcaatggacgagaacatgtaaaacacgagcgtcccagtcctgaa
aaaggagaaagaacaaacagtgttcgagtggagtctccctga
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