Cyprinus carpio (common carp): 109082331
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Entry
109082331 CDS
T05134
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
ccar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109082331
04148 Efferocytosis
109082331
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109082331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109082331
Membrane trafficking [BR:
ccar04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109082331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_Prp19
TPR_7
Beta-prop_HPS5
WD40_WDHD1_1st
TPR_17
Vps39_1
Beta-prop_EML_2
FAD_binding_1
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
109082331
NCBI-ProteinID:
XP_042570104
Ensembl:
ENSCCRG00000032583
UniProt:
A0A9Q9VS47
LinkDB
All DBs
Position
A24:10570277..10591763
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AA seq
854 aa
AA seq
DB search
MAEVEDQGRKLSEESTDESEEEDTEEEPKLKYERLTNGVTEVLQKDAASCMTVHDKFLAL
GTHFGKVYLLDIQGNVTQKFEISLVKINQISLDESGDHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVALHPQFSKSNNKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGNITNVKWR
ANLIAWANNLGVKIYDIGSKQRITNVLRDNTSLRPDMYPCSLCWKNNTTLIIGWGSSVKI
CVVKERDPTEIRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKENSEHMEEEFRT
RPRLDIIQPLAEGCEEISSDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVERGDYDAAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLI
REWPGELYNNMAIVQAVNEHLKKDPTNSMLLTTLAELYTYDQRYDRALEIYLKLRHKDVY
QLIHKHNLFSSIKDKIVLLMDFDKEKAVDMLLDNEDKISMDKVVEELKDRPELLHVYLHK
LFKRDHHKGQKYHERQISLYAEFDRPNLLPFLRESMHCPLEKALEICQQRHFVEETVFLL
SRMGNCRRALQMIMEELADVDKAIEFAKEQDDRELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQRMHRTQK
RGVRVDEENICESCHTPILPSDTAQAFGVVVFHCRHMFHKECLPSPGNVPGIQYCNICSA
KRRGPGSGILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaggaccagggaagaaaactaagtgaagaatccacagatgagtcagag
gaggaggatacagaggaggagcctaaactgaagtacgagaggctgaccaatggtgtgacc
gaggtcttgcagaaggatgcggccagctgcatgacagtgcatgacaagttcctggctctt
gggacacactttgggaaggtttaccttctggatatccaaggaaatgttacacagaagttt
gaaattagtctagtgaaaataaaccagatcagtttggatgagagcggtgatcatgttggc
atctgttctgaagatggaaaggtgcaagtgttcggcctgtacaccagggagggcttccac
gaaaactttgactgtcccatcaaggtcgtggcgctacaccctcagttcagcaaatccaac
aataaacagtttgtgactggaggaaataagcttttactttatgagaggaactggctgaac
cgttggaagacatctgttctgcatgaaggagagggaaacatcaccaatgtgaaatggaga
gccaatctcattgcctgggcaaacaatttgggtgtaaaaatttacgacatcggcagtaaa
cagcgcatcactaacgtgttgcgggacaacaccagtcttaggccggatatgtacccctgc
agtctgtgctggaaaaacaacaccacgctgatcatcggctggggctcttctgtgaagata
tgtgttgttaaagagcgtgacccaacagaaattagagatctacccagtcgctacgttgag
attgtgtcagcatttgagacagagttcttcattagtggattggcgcctttggcagatcag
ctggtcactctgtactatgtcaaggagaactctgagcacatggaggaggagttcagaaca
cggcctcgtttagacatcatccagccgttagctgagggctgtgaggagatctcatcagac
gctctcactgtacgcaacttccaggagaaccagtgcagggactacagactcgaacactct
gagggagagtctctattctacatcatcagccctaaagacattgtagtggctaaagaaaga
gaccaggacgaccacattgactggcttctggagaagaagaaatatgaggaagcactgatg
gctgcagagatcagcttcaaaaacattaaacggcatgatgtacagaaaattggaatggcg
tacatcaatcatttggtggagaggggagattatgatgcagctgccagaaagtgtcaaaaa
gtgctcggaaaaaacatggatctctgggagaatgaagtgtacagattcaaaacaattgga
cagttgaaagccatcagtcagtacttaccaagaggagaccttcgtcttcgaccagcaatt
tatgagatgatacttcatgagttcctcaagactgactatgagggttttgccacactgatt
cgtgagtggccgggagagctgtataacaacatggctatagttcaggcagtgaatgaacac
ctgaagaaggaccctaccaacagcatgctcctcaccacactggccgaactctacacgtat
gatcagcgttatgatcgcgctctggagatctacctgaaactcagacacaaagatgtttac
cagctcattcacaaacacaacctgttctcctccatcaaagataagattgtcctgctcatg
gatttcgacaaagagaaagctgttgacatgctgctggataatgaagataaaatatcaatg
gacaaagtggtggaggaattaaaagacagacctgagctgttacatgtgtatttgcataag
ctgtttaagcgggaccaccataaggggcagaagtaccatgagaggcagatcagtttgtat
gctgagtttgaccgacccaacctcctacccttcctcagagagagcatgcactgcccacta
gagaaggctctggaaatctgtcagcagaggcactttgtagaagagacggtcttcctgctc
agtcgtatgggaaactgcagacgtgccctgcagatgatcatggaggagctggcggatgtg
gacaaagccatcgagtttgctaaagagcaggatgacagagaactctgggaggatctcatc
tcttactctatagacaaaccaccgttcatcacaggcctcttgaataacatcggaacccat
gtggaccccatcctgctcattcaccgcattaaagaaggaatggagattcctaacctcaga
gactcgctggttaagatcctacaggactacaatcttcagatcttactgagagagggctgt
aagaagatcctggttgcagattcactgtctcttctacagaggatgcacaggacgcagaag
agaggagtgcgggtggatgaagaaaacatctgtgaatcctgccacactcccattctacca
tcagacacggctcaggcattcggtgtggtggtgtttcactgcagacacatgttccacaag
gagtgtctaccgtcccctgggaacgttccaggaatccagtattgtaacatctgcagtgca
aagcggagaggaccgggcagtggcatactggagatgaagaaataa
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