Cyprinus carpio (common carp): 109082792
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Entry
109082792 CDS
T05134
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
ccar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109082792
04148 Efferocytosis
109082792
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109082792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109082792
Membrane trafficking [BR:
ccar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109082792
Hops complex
109082792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_Vps41
Lact-deh-memb
zf_RING_Vps8
zf-C3HC4_2
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-rbx1
zf-RING_5
DUF5600
DUF1664
zf-C3H2C3
KNOX2
DUF2175
DUF4446
STX17_N
zf_RING_Vps8_fungal
LETM1_C
zf-RING_UBOX
ANAPC4_WD40
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
109082792
NCBI-ProteinID:
XP_018953173
Ensembl:
ENSCCRG00000029789
UniProt:
A0A8C2KC08
LinkDB
All DBs
Position
A20:complement(15367757..15373059)
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDQYEDSQNIRQHSRVSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEKINHF
SVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDSKVHKLFLDPTGSHLVISLTTNE
CVYLNRNTQKVRSLSRWRGHLIESIGWNKLTGSETNTGPILVGTSQGIIFEAEISASEGT
LFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLESKYFIVATTRKRLFQFVGKLAEGSE
QQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSSPKTFAWMMGNGVLYGQLDYV
RPDSLLSDVQVWEYTSDIDLNFVKPISIVLTQFHFLLLLPDRVKGICTLNGQVVHEDVFP
EKFGSLKKMIKDPITGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCKDRPE
CLDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALRFIEAKQEEALKEFLIKKLTNF
KPTEKTQITLLVTWLTELYLNRLGQLETDDGKQHLFLETREEFRTFLKSPKHKECFYNNR
NTIYDLLASHGDVDNMVYFSVIMQDYERVISHYCQHDDYSAALDVLSKHCDDKLFYKFSP
VLMQHIPKKVVDAWIQMGNRLDPKNLIPALVNYSQMGSMQQINETIRYMEFCVYELDVKD
EAIHNYLLSLYAKHKPDSLLWYLEQAGTHVSDIHYDLKYALRLCAEHGYLQACVLVYKIM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNQHIEELKQEMEEATESAKRIREDIQEM
RNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLLQEVIPHLSSYKQNKLDELQK
KLAATTQTTKSRHRPKEEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKPF
IEPQKFDQEMSSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcatctattctggatcaatatgaagattctcagaacatccgtcagcacagccgagtg
tcagcggctaacatcgggattactcattcagggtttgtgaatgtaaggttggaggaagag
aaacctattttcaacaagcagcgcatcgatttctcacctcccgaaaaaatcaaccatttc
tcagtgtgcaacaaccagttatgcatgagtctggggaaggacaccctgctgagaattgat
cttggaaaacctgatcagccaaatcagattgaactgggaagaaaggatgatagcaaagtg
cacaaacttttcctagatcctacagggtcacatttagtcatcagcctgaccacaaacgaa
tgtgtatacctaaaccgaaacactcaaaaggtccggagtctgtcacgatggagaggtcac
ctgattgaaagcataggatggaacaaattaaccggctctgagaccaacaccgggccgatt
ctggtcggcaccagccagggaatcatctttgaagcggagatatctgcctcagagggcact
ctgtttaacactaacccagaccagtacttcagacaggttcattctttggaggaggatggc
aagccagctccggtttgttgcctcgaggtggaacgtggcttggaatccaagtacttcatt
gttgcgaccacacggaaacgccttttccagtttgtaggaaagctggcagagggatccgag
cagcaggggttcagctccatctttgcccagaaccaggatctcctacccagcttccaggag
tttccagtcaatatgggctacagtgagattacgttctacacgtcaaagctgcgcagttcc
ccgaagacctttgcatggatgatgggaaatggggttttgtatggacagctagactacgtg
cggcccgactctctactcagtgatgttcaagtgtgggaatacacatcagacattgatcta
aacttcgtcaagcccatctctatagtactcacacagtttcacttcctgctcctgctccca
gatcgcgtcaagggtatctgcactctgaacgggcaggtagtgcacgaagatgtgtttcca
gaaaagttcggcagtctaaaaaagatgatcaaagatcccatcaccgggctcgtgtggatc
tacacagagaaagctgtgtttcgctaccacatccagagggaggcgcgggacgtttggcag
atgtacatgagcatgaataagtttgacctggccaaagagtactgcaaagaccgaccagaa
tgcctagatatggtgcttgccaaagaggcggagcactgcttccagaacaagcgctacctg
gagagcgccaaatgctacgctctcactcagaattactttgaggagattgcgctgaggttc
atcgaggccaagcaggaggaggccttgaaagagtttctgattaagaagctgaccaacttc
aagcccaccgagaagactcagatcaccctgctggtcacctggctgacagaactctatctg
aaccggctcggtcaactggagaccgatgacggcaaacaacacctcttcctagagacccgc
gaagagttccgcacctttcttaaaagccccaaacacaaagagtgcttctacaacaatcgc
aacaccatctacgacctgctcgctagtcacggcgacgtggacaacatggtgtatttctcg
gtcatcatgcaagattatgaacgcgttatatctcattactgccagcatgatgactacagt
gcagctttagacgttctctccaaacactgcgatgacaagctcttctacaagttctcccca
gttctcatgcagcacatccccaaaaaggtggtcgatgcatggattcagatgggaaatcgg
ttggatcccaagaatctgatcccagcgctggtgaactacagccagatgggcagcatgcag
cagataaatgagaccatccggtacatggagttctgtgtgtatgagctggatgtcaaagac
gaagccattcacaattacttactctcgctttatgccaaacacaagccggattctctgttg
tggtacctcgaacaagcgggaacacatgtctctgatatccactatgacttgaaatatgcc
ttacgcctttgtgccgagcatgggtacctgcaggcctgcgtcttggtttacaagattatg
gagctgtatgaggaagctgtggatctagctctacaggtggatgtagatttggccaagtct
tgcgccgaccttccagaggatgacgaggagttgaggaagaagctgtggctgaagattgct
cgtcatgtggttcaggaggagaaggatgtcaagaaagccatgaactgtctttccagttgc
aaccttcttaagattgaggacatcttgcctttctttccagattttgttacgatagaccac
ttcaaggaggcaatttgcaactccctggaagagtacaaccaacacatcgaggagctgaaa
caagaaatggaggaggccacagaaagtgccaaacgtatccgtgaagacatccaggagatg
aggaacaagtatggggtggtggagtctcaggaaaaatgtgccacttgtgatttccccttg
ctcaaccgacctttctatctcttcctttgtgggcacatgttccattatgattgcctctta
caggaagtcatccctcacctctcttcctataagcagaataaattagatgagctacagaag
aagctggcagcgaccacgcagaccaccaaatccaggcacaggcccaaagaggaggatacg
gtcagcttaggcaagggtcaaggaagcagagagcagatcaagtcagacattgatgacatc
atagcgtgtgagtgtgtctactgtggagagctaatgatcaaatccattgacaagcctttc
atagaaccacagaagtttgatcaagagatgtccagctggctctga
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