Cyprinus carpio (common carp): 109083190
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Entry
109083190 CDS
T05134
Symbol
setx
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109083190 (setx)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109083190 (setx)
5.6.2.5 RNA 5'-3' helicase
109083190 (setx)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109083190 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
AAA_30
UvrD-helicase
AAA_22
AAA_16
ResIII
Helicase_RecD
nSTAND3
DUF6240
AdoMet_Synthase
DUF2140
Motif
Other DBs
NCBI-GeneID:
109083190
NCBI-ProteinID:
XP_042603766
Ensembl:
ENSCCRG00000017973
ENSCCRG00000048391
UniProt:
A0A9Q9XL41
LinkDB
All DBs
Position
B21:3500318..3524384
Genome browser
AA seq
2243 aa
AA seq
DB search
MEKCLWCTTSLEAEGDAAIVAMLRRYSSGELSRREMESLNEDLGCCLECVVEYHRARDKV
PHLHKHLWEMEKARLVHLLETVLDKELEEDDIFIVEDDHEEPVSKMSPVEFHDRLRFSLF
EVLKYPYLLCYRDLCDLVVKALCKLQDMKQSLTVFEKYQGIYLLLVHPNEQVRRWAIDTA
KTMKSVDRDSYYDLQEIFFCMFYVIELGISLDFPDLEPESYAGGAIQMLPSHLYDSQNKK
NCWLGICMLLTQLSAEAMDSLFMGQFNIPLCILSTMDGLENEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNTAFQTITGAASYVAELRNIRKKTMGRWVFCLSSFFCFWCMFIFYE
DMQSLVTVLDSEMGQSMRVYGSTFLWFIPFVRSIMELPELNASYISEVIHYLCDKIRENR
HALTGQTSVCDKVTEFFTRILIQIVELHSTEGRMGILSRCAQKWVGEIVLCVILSDETHG
PPDRMGGIHGVSSTSCNVGIVGRLPASGGGIGAIIAGCMKLIRLLLKEGIRRSVPSATLF
LNLLNKQLRGVTNKRWDLTRSESDELQKCLLRVVRSMPERSASPLSVVPPPCAPSVEAAT
NTVISRNSVPTLNQQRHEHQEAGPSRAGDESGFIKEESIWNYGNWNLDEDLCSGLEVIIK
AKKEPLDPVSISKQSPFVQLERIKPDMGKVQEIRSRLNDSQKLSKIKAIAKQKPSESLKP
AKEECGFGTAEEEDEEDDDEPLDIKLFYCDDSDNDERPNDILSSPEVCVLPESPSRDYDD
LSESQVFEFETQQYVASAWGDSDFDASDLTKKSKSDQLLKPQVDEAPREASPSSETELIP
DEDIERTCQQAEDNIREQQQPQESVDSCALSLSKASSTAESWDKFVKPKPVKSTKTTSSD
KKQPKKPLIIDALAQSRRHPWKRSSKPQDVEEPSSSTTPSSSSSPSCSSVSSPYFSAPSS
SHTPAIVPPKKVRKVVEPESKAERLGLKKKERKAFELSQRSLDCVAKLRCHGQKVQVEPQ
QKTRRVRRGTKTSPQKRIVKGNKKLLGSQDIQFFRQSREKQANQKPATGAITTSAPKPAN
INQPGEVHLPEPTVASSEAGDFFHCPQLDPDHQQDNENSASGTNSAGDGAGNNKIVQSKY
FQASETADVNMEKEKPAQEDDDEWMFLTQMEPTDMELCSQMEQFEEENGDELFLTQRDPI
DMDIDTDSESDTPGPTLTPKPIQTPIGGNDDHLFLKPGMSPMSQKKAKPSTTKIYTPSSR
SASLVLEMEKGAKPPPAAGXKAKIPRLPPAMPPPKTFQPLHPPQLPKPXSFTTLSLCPKL
VTSSKISSTSEPPSYKVYQRPETPVNKPVPATDQSSTFDLSVLTQAILKWEYRMLDNYKA
SGSPHDLCHLPLKKVPVQFSSYLEYFNTLYPLLLINAFEEMASEWLREGRVKLNLTVQGI
EYSNRTASASFTANISQETDIKQLYPKEDDLVLLWLPDNTGSYAHDEPNFHEPHPHFGYV
SRSSVSNRGSGSRPILNLTIQTRSNISSGSSQPVLCEVIGSLVSIFREFSALCLLRSGPM
LRPLLAPNASHFTHTLDSPPDLDSPEFNRDQSRAIACGLAMIKRKKKTPKFLLIHGPPGT
GKSKTIGGLLYKLLSSGTNSAAPSGNLHSKSRRTRVLLCAPSNAAIDSLMKKVILIFKEK
CRNINAPQGNCGDINLVRLGNERTISKSLKLFSLDHQTKARAQRAQQTAEADIHRRKEQL
EQIIENLSQQCAKANKDSFEFKTLMEQKMQLLKEREGLGRQIKECRIRRQESQAVVLQNA
HVICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRSPVVILVGDP
NQLPPTVVSQKAKEFGFDQSFMARLCKSVCQSNPQLSPILLLSEQYRMHPEICEFPSKYI
YNSALKDDCETAQKRCSLSWPFKPYKVFDVTDGIEKKERDSFSNHKEVKLVLLLLKLLGE
KQSVRVGVITPYNAQKQRILEAIRGSGIDNKQLQFRVDVDTVDGFQGREMDCIIVSCVRA
SSETGSIGFVGNRQRMNVTITRARFSLFILGHIRTLREQSDWGALIEDARKRKTIIKTMQ
KDFERDARQILKPERETPTRSLSYPPIGIPSTVTSPVTHAPVETDPAPAPRPQHDMSNAP
MPRLIPLECPNNPRMTDRPTDPRFAERRPIREQGPDRDRRGLPESRHSTNRANSYEGDSR
STGQSSRYSSKHSSSSPSRRHRR
NT seq
6732 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacctccctggaggcggagggtgatgcagcgatagtc
gccatgctgcgtcgctacagctcaggggagctgtctcggagagagatggagtctctgaat
gaagacctcggctgctgtctggagtgtgtggtggagtatcatcgagccagagacaaggtc
cctcatctgcacaagcatttgtgggaaatggaaaaggctcgactcgtgcatttgttggaa
actgttctggacaaggagctggaggaggacgatatctttatcgtcgaagatgatcacgag
gagccggtgtcgaagatgtcgcctgtagaattccacgaccgtctccgtttctcgctgttt
gaagttctgaagtatccgtacctgctttgctaccgtgatctgtgtgatttggtggtaaag
gccttgtgtaagttgcaggatatgaagcagtctttgactgtgtttgagaagtatcaagga
atatatctgcttcttgttcatcccaacgagcaggtgcgccgttgggcaattgatacagca
aagacgatgaagagtgtggatagggactcctactatgaccttcaagagattttcttttgc
atgttttatgtcattgagcttggaatatctttggactttccagatttggagccagagtct
tatgcagggggcgctatacaaatgctcccctctcacctctatgactcgcaaaacaagaag
aactgctggctaggtatctgtatgttactaacgcagctcagtgcggaggcaatggactct
ctgttcatgggacagtttaacatcccgctttgcatactcagcacaatggatgggttggaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ctggaccgacttggttctaagatatggggtcaggttgaccctaatacagcattccagaca
atcaccggagctgccagctatgttgcggaattaaggaacatccggaaaaaaaccatggga
aggtgggtattttgtttgtcttccttcttttgtttttggtgtatgtttattttctatgag
gatatgcagtccctggtcaccgtgcttgattctgaaatgggccagagcatgcgtgtatat
ggaagcacttttctgtggttcattccatttgttcgttccataatggaacttccagagctc
aacgcttcctatattagtgaagtcatccactatctttgtgataagatacgagaaaatcga
cacgcactaactggacagacaagtgtgtgcgataaagtgaccgagtttttcactcgtatc
cttattcaaattgttgagctacactctactgaagggcgaatgggaatactttctcgctgt
gcccaaaagtgggtgggagagattgtcttgtgcgtcatactgtcggatgaaacacatgga
ccaccagacaggatgggtgggattcatggagtcagttcaacctcatgcaacgttgggata
gttggaagactgcctgcatctggaggaggcattggtgccataattgctggctgcatgaaa
ctgattcgactgctgctgaaagaagggataaggagatctgtcccaagtgcgacccttttt
ttgaatttgcttaacaagcagttgcgtggagttacaaacaaacgatgggatctaacacgt
tctgaatctgatgagcttcagaagtgtctgttaagagttgtccggtcgatgccagaaaga
tctgcttctccactctctgttgttccaccaccatgtgcaccatcagtggaggcagctaca
aacacagttatttccagaaattctgtgccaaccctaaatcagcaacgacatgagcaccag
gaggcaggtccaagcagagcaggagatgaatctggttttatcaaagaggagtcaatttgg
aattatggaaattggaacttggatgaggatttgtgcagcggtcttgaggttatcataaag
gctaagaaggaaccccttgacccagtgtcaatttcaaagcagagtccatttgttcagttg
gaacgtattaaaccagatatgggtaaagtgcaggaaattcgatccagattaaatgatagc
cagaaattgtcaaagatcaaagccattgctaaacaaaagcctagtgagtccttaaaacca
gctaaagaggaatgtggttttggaactgctgaggaggaggatgaggaggatgacgatgaa
ccccttgatatcaaactgttctattgtgatgattctgataatgatgaaaggccaaatgac
atcctgagttctccagaagtttgtgtcctgcctgagagccccagtcgtgattatgatgat
ctcagtgaatcacaggtctttgaatttgagacccagcaatatgtggcgtctgcctggggt
gattccgattttgatgcgtcagacttgacgaagaagtccaaatcagaccaactactcaaa
ccacaggtggatgaagctcctcgtgaagcgtctccaagttcagagaccgaactaattcca
gatgaggacattgagaggacctgtcagcaagcagaagataatatcagagagcagcagcag
ccacaagagtcagtggattcatgtgcattgtctttgtccaaagcatccagtactgcagaa
agctgggataaatttgtcaaaccaaaaccggttaaaagcacaaaaacaacttcatctgat
aagaaacagcctaaaaagccattgataattgatgcccttgctcaaagcagacgccacccc
tggaaacgcagctcaaaacctcaggacgtagaggaaccttcctcttcaactactccatcc
tcatcttcctctccatcctgcagctctgtttcctctccttatttttctgcccccagttca
agtcatacccctgcgattgttcctccaaagaaggtgcgtaaggttgttgagccagaatca
aaagcagagcgtttgggattaaaaaagaaggaaaggaaagcatttgaactttctcagcgc
tccctggattgtgttgctaaactgaggtgccatggccaaaaagtgcaagtggaaccacaa
cagaagacaaggcgagtgcgtcgaggcactaagacttctccacagaaacgtattgtaaaa
ggcaacaagaaacttctgggttcacaagatattcagtttttcaggcaaagccgtgagaag
caggccaatcagaagccagcaacaggagccatcacaacatcagctcccaaaccagcaaat
atcaatcagccaggtgaagtgcacttgccggaacctacagttgcaagcagcgaggctggt
gatttctttcactgtcctcagctggatcctgaccatcagcaggataatgaaaattctgca
tcaggaaccaattctgcaggtgatggggctggaaataataagatagtacaatccaagtac
ttccaagccagtgagactgctgatgtcaacatggaaaaagaaaaacctgctcaggaggat
gatgatgaatggatgttcctcactcagatggaacccaccgacatggaactgtgctctcaa
atggagcagtttgaggaagaaaatggtgatgaactctttcttacccagagagatcctata
gacatggacattgacaccgatagtgagtcagataccccagggccaaccttgacacctaaa
cctattcagactcctattggtggaaatgatgatcatttgttcttgaagcctggcatgtca
cctatgtctcagaaaaaggccaaaccttctaccacaaaaatatacacccctagctcccgc
agtgcctcgcttgtccttgaaatggaaaaaggagctaagcctcctcctgctgcgggtntg
aaagcgaagattccccgactgcccccagcaatgccacctccgaaaacatttcaacctctc
catcctccacaactcccaaagccancttccttcacaacactctccttatgccccaagttg
gtcactagttctaaaataagctccacctcggagccaccatcttacaaggtataccaaaga
cctgagactccagttaacaaaccagtacccgcgactgatcagagctcgacgtttgacctt
tcagtcttgacccaagcaatccttaaatgggaatataggatgcttgacaattacaaagca
tctgggagtccacatgatctgtgccatctaccgctgaagaaagtgccagttcagttttct
agctacctggagtacttcaacaccttgtaccccctgctgctaattaatgcatttgaagag
atggcgagtgaatggctcagagagggcagagttaagcttaacctaacagtccagggtata
gaatacagcaatcgcacagctagtgccagcttcacagcaaacatttctcaggagactgat
ataaaacaactgtacccaaaagaagatgatcttgtgctactttggttgcctgacaacact
gggtcatatgcccacgatgaacctaacttccatgaaccacatcctcattttggctatgtg
tctcggtccagtgtttccaacagaggttcaggttccaggccaattctaaacttgacgatt
cagacacgtagtaatatatcttcggggagttcccaacctgtgctctgtgaagttattgga
tcattggtcagcatattccgggagttcagtgcactgtgtttgctgcggagtggaccaatg
ttgcgacctcttcttgctccaaatgcatctcatttcacacacactctggatagcccaccg
gacctggattcaccagagttcaacagggaccagtcaagagcaatagcttgtggtcttgcc
atgataaagagaaagaagaagactccaaaatttctccttattcatggtcctccaggaacc
gggaagagtaaaacaattggtggcctgttgtacaaactactatcttcgggtactaacagt
gctgctccttcggggaaccttcactccaagtctcgacggacacgagttcttctctgtgct
ccctctaatgctgccatcgacagtctgatgaagaaagtcattttgatctttaaagagaaa
tgcagaaacatcaacgcacctcaaggtaactgcggtgacataaacctggtacgattggga
aatgaaaggaccatctcaaagtcactaaaacttttcagcctcgaccaccagactaaagct
agagcacagcgagctcagcaaactgcagaagctgacatacacaggcggaaggagcaactg
gaacaaattattgaaaatctctcccagcaatgtgcaaaagccaataaggattcttttgag
ttcaagacattgatggagcagaagatgcagcttctgaaagagagagaaggactgggtcgg
cagattaaagagtgtcgcatcaggcgacaggagagtcaagctgttgtgcttcaaaacgct
catgtgatctgctgcacgctcagcaccagtggaagtattgtcctcgagaatgccttccgt
cgtctcggacatgaaccatttagctgcgtcatcattgatgaggctagtcaggctaaagaa
actgagactctgatccccatgctgtaccgaagtcctgttgtaatccttgttggtgatccc
aaccagcttccaccaacagttgtctctcagaaagcaaaggagtttggctttgaccagtct
tttatggcaaggttatgcaaaagtgtttgtcagtcaaacccacaactctctcccatcctc
ctgctcagcgaacagtaccgcatgcacccggaaatctgtgaattcccctccaagtacatc
tacaacagcgctcttaaggatgactgtgagaccgctcagaagcgctgttccctcagctgg
cccttcaagccctacaaagtgttcgacgtgacggatgggatagagaagaaggagagagat
tcattttccaatcacaaagaagtcaagctggtcttgctgctgttgaagctgctgggtgag
aagcagtccgtgcgagtgggcgtcatcacgccctataacgcccagaaacaacgcatactg
gaagccatcaggggttcaggcattgacaacaagcaacttcagtttagggttgatgtggat
actgtcgatggctttcagggcagagaaatggactgcatcattgtgtcttgtgtgagagcc
agcagtgaaacgggctccattgggtttgttggaaatcggcagagaatgaatgtaaccatc
accagagccagatttagtctctttatactgggacatatacgcacactcagggaacaaagt
gattggggagcattgattgaggacgccaggaaacgtaaaactatcatcaaaactatgcaa
aaagattttgaaagggacgccaggcagattcttaaaccagaacgagagacgccaacccgc
agtctctcttatcccccaatcgggataccaagcactgtgacctcacctgtgacgcatgca
cctgtggaaacagaccccgcccctgcgccccgccctcaacatgacatgagcaatgcgcct
atgccacggctaatacccttggaatgccctaataacccacggatgaccgacaggcccaca
gacccacgtttcgcagagcgccggccaatcagagaacagggaccagacagagataggcgg
ggcttaccggagtcccgccactcaacaaacagagctaattcgtatgaaggtgactctaga
agtactggccagtcttccagatactcttcaaaacacagcagttcttcaccatcaagacga
cacaggagataa
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integrated database retrieval system
