Cyprinus carpio (common carp): 109084230
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Entry
109084230 CDS
T05134
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109084230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109084230
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109084230
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109084230
Complex C
U5 SnRNP specific factors
109084230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
109084230
NCBI-ProteinID:
XP_042618389
Ensembl:
ENSCCRG00000030376
UniProt:
A0A8C1M0S6
LinkDB
All DBs
Position
A8:complement(15111951..15127459)
Genome browser
AA seq
2134 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPTDDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDDSEGVEADESSTLT
ANLGNTGDVMMTKKKDLHPRDIDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSEAEKEKIMNKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDIDHGEAVTSKQLLDLEDLAFTQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDDETLVAIEKLPKYAQAGFEGFKTLNR
IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIAP
MRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGDR
TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYSFA
IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA
EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYAVSHDDRSIDPLLERRRMDLVHTAATV
LEKNNLVKYDKRSGNFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKMHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNTAFESLYQK
FPFFNPIQTQVFNALYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPMEA
LAEQVFVDWHQKFQETLNKKVVLLTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQRKN
VQNVSLFIVDEIHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVP
SRRQTRLTAIDILTFCAADVVPQRFLHATEKDLVPFMENLSDVTLKETLSNGVGYLHEGL
SPTERRIVEHLFTSGAIQVMVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYMTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHE
DTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESIFD
IMEMEDEDRTGLLQLTDVQMADVARFCNRYPNIELSYEVADKDNIKSGSPVVVQVQLERE
EEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVHNY
TLYFMSDAYMGCDQEYKFSMDVNEADSEGESDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagtttgcagtatgaatataaagcgaactccaacttggtg
ttgcaagcggacagatctctgatcgaccgcacccgcagagatgagcccaccggagaggtg
ctgtccctggtcggcaaactggaggggacaaagatgggagacaggagtcagagaaccaaa
ccgcagatgctggaggagaggagagcaaagagaagaaagagagacgaagacagacacgac
ataaacaagatgaagggcttcacactgctgtctgaggggattgatgagatggtgggcatt
gtgtacaagcccaagaccaaagagaccagagaaacttatgaaatcctcctcagcttcatt
caggcagcccttggagatcagccaagggatatcctgtgtggagcagcagacgaggtgttg
gctgtgctgaagaatgacaagatgagagacaaagaaaggaggagggaggttgagcagttg
ctggggcctactgacgacacacgctaccacgtcctggtcaacctgggcaagaagatctct
gactatggtggagacaaagagctccagaatatggatgacaacattgatgaaacctatgga
gtcaatgtgcagtttgagtctgatgaggaggagggtgatgaggaccagtacggagaggtt
cgggatgaaggttctgatgacagtgagggagtggaggcagatgagagcagcaccctgact
gctaacctgggaaacacaggcgatgtaatgatgaccaaaaagaaggatcttcacccccga
gacattgacgccttctggcttcagcgacagctcagccgcttctacaatgatgccatcgtg
tctcagaagaaagccgatgaagtcttggagatccttaagactgccagtgatgacagagag
tgtgagaaccagctggtgctgcttttgggcttcaacacattcgacttcatcaaggtcctc
cgccagcacagacgcatgatcttgtactgcaccatgttggccagtgctcaaagtgaggct
gagaaggaaaagatcatgaataagatggaagctgatcaggatctttccaaagttctttac
cagctgcaggagactgaaaaagaggacatcatcagggaggagcgatctcgccgggagaga
gtgagaaagtctcgtgtggatgatctggagtctatggacattgatcatggagaggctgtg
acctcgaagcaactactagatctggaagatctggccttcactcagggcagtcacttcatg
gccaacaagcgttgtcagctgcctgacggctccttccgcaaacagaggaagggttacgag
gaggtccatgtgcccgctctcaaacccaaaccctttggggatgatgagacattggtggct
attgagaagctgcccaaatatgctcaagctggatttgaaggattcaaaaccttgaatcgc
atacagagtaaactcttcaaaaccacaatggagacggatgaaaacctgctggtttgcgct
ccaacgggtgctggcaaaactaatgttgctctcatggcaatgctccgagagatcggaaag
catatcaacatggatggcaccatcaatgttgatgattttaaaatcatatacatcgctccc
atgcgttcactagtacaggagatggtgggcagctttggcaagcgcttggctagctatggc
atcactgtttctgagctgaccggagaccatcagctgtgtaaggaggaaataaacgccacc
cagattattgtctgcaccccagagaaatgggacatcatcacccggaaaggaggagaccgc
acatatacgcagcttgtgcgccttattattatcgatgagatccacttgctgcatgatgac
cgtggccctgttctggagtccctgattgctcgaaccatccgcaatgtggagctgacacag
gaagacgtgaggctcattggcctcagtgccacactgcctaactatgaggatgtggcaacc
tgccttcgtgtggatccatccaagggactcttctattttgacaacagtttccggcctgtg
cctttggaacaaacctatgtaggaattacagaaaagaaggctatcaagcgtttccagatt
atgaatgagattgtctatgagaagatcatggaacatgctggaaagaatcaggtgttggtg
tttgtgcactcgagaaaggagaccggaaagacggcacgtgcgatcagggacatgtgtttg
gagaaggacactctggggttgttcctgagagagggttcggcctccactgaggtcctgagg
actgaagcagagcagtgcaagaacctggagctgaaagatctgttgccgtatagttttgct
attcaccatgctggaatgaccagagtggacagaacattggtagaggatctgtttgctgac
cgtcacattcaggtattggtgtctacagccactctggcctggggtgtgaacttgccagcg
cacacggtcatcatcaaaggcacacaggtgtacagcccagagaaaggcagatggacagag
ctgggagccctggatatcctacagatgctgggtcgtgctggtaggccgcagtatgactct
aagggagagggtattttgatcacttcacatggagagctgcagtattacctgtccttgctc
aatcagcagctgcccatcgagagccagatggtggccaaactacccgacatgctcaatgca
gagatagtgttgggcaatgtgcagaatgccaaggatgctgtaaattggctgggttacaca
tacctttatgttcggatgttgcggaaccccactctatatgcagtctcccatgacgaccgc
agcattgaccccctgctggagcgacgcaggatggacctggtgcacacagcagccaccgtc
ttggagaagaacaacttggtcaaatatgacaagagatctggcaactttcaggtgacagac
ctaggccgcattgccagtcatttctacatcacccacgagtccataatgacttacaaccag
ctgctgaagcctacactgagtgagattgagctcttcagggtgttctcgctctcctctgag
ttcagaaacatcaccgtcagagaggaagaaaaacttgagcttcagaaactgcttgagaga
gtccctattccagtgaaggaaagcattgaagagcccagtgcaaagattaatgtgctgctg
caggcatatatatctcagctcaaactggagggctttgctctcatggctgacatggtctat
gtgacacagagtgctggcaggctgatgagggccatttttgagattgtcctgagcagaggc
tgggcccaacttaccgacaagactttgaacctttgcaagatgatcgacaaaaggatgtgg
cagtcaatgtctcccttacgccagttccgtaaacttccagaggaggtcatcaaaaagatt
gagaagaagaactttccctttgaacgcctctatgatctgaaccacaacgaaattggtgag
ttgatccgcatgccaaagatggggaagaccattcataagtatgtccatcagttcccaaag
ctggacttggcagttcatctgcagcccatcacacgctccactctgaaagtggagctcacc
atcacaccagatttccagtgggatgacaagatgcacggctcatctgaagccttctggatc
ttagtggaggatgtggacagtgaggtcgttcttcatcatgagtacttcctcctgaaggcc
aagtacgctcaggatgagcatcttgtcactttctttgtgcccgtgtttgagccgctgcca
ccgcagtacttcattcgcatagcttcagaccgttggctgtcatgtgagacacagctgccc
gtttcattccgtcacctgatcctgcctgagaaatatcctccccccaccgagctgctggac
ctgcagccattgcccgtgtctgctctaagaaacacagcctttgagagcctctaccagaag
tttccctttttcaacccaatccagacccaagtgttcaatgcattgtacaacagcgatgat
aacgtctttgttggcgcccccactggcagcgggaagaccatatgtgctgagtttgccatt
cttaggatgctcctacataactcagagggccgctgtgtctacatcacacccatggaggct
ctagccgaacaggtctttgttgactggcaccagaagttccaggagactttgaataagaag
gttgtcctgctcaccggtgagacgagcactgacctcaagctgctgggtaaaggcgacatc
atcatcagcaccccagacaagtgggacatcctatcccggcgctggaaacagaggaagaat
gtgcagaacgttagtctcttcattgtagatgagattcatctcattggaggtgacaatgga
cctgtactggaggtgatttgctccaggatgaggtacatctcctctcagatcgagcggccc
atccgtatcgtggccctcagctcctctctgtccaatgctaaagatgtggcccactggctt
ggctgcagcactacggcaaccttcaacttccaccccaatgtcagaccggttcctcttgaa
cttcacatccagggcttcaatgtgagtcacacacagactcgtctgctgtccatggctaaa
ccagtgtatcacgccataatgaaacattccccatccaagccagtgctggtgttcgtgcca
tcaagacgtcagactcgtctcactgctatcgatatcctcaccttctgtgctgcagacgtg
gtcccacaaaggttcctgcacgcaactgagaaggacctagttccattcatggagaatctc
tctgatgttacactgaaggagaccctctctaatggggtggggtaccttcatgagggcctt
tcacctacagagcgcaggattgtggagcatctcttcacttctggtgccattcaggtgatg
gtggcatctcgttctctctgctggggcaccaacatttctgcccacctggtgattgtcatg
gacacgcagtactacaacgggaaaatccatgcatatgtggactacccaatctatgatgtg
ctccagatggtaggaaaggctaaccgtcctctccaggatgatgagggccgttgtgttatc
atgtgtcaagggtccaaaaaggacttcttcaagaagtttctctacgagcctctgcctgtg
gagtctcacctggaccactgtcttcacgaccatttcaatgctgagatcgtcaccaagaca
gtggagaacaaacaggatgctgtagactacatgacatggacatttctgtatcgccgcatg
acccagaaccccaactactacaacctgcagggtatgtctcatcgtcacctgtcagatcat
ctgtctgaactggtggaaaacaccttgcaagatctggagcagtccaagtgcatcagcatc
gaggatgagatggatgtggcacctctgaatctgggcatgatcgcagcctattactacata
aactacaccaccattgagctgttcagtatgtcactgaacgccaagacaaaagtccgtggc
ctcatcgagatcatctccaatgctgcggagtataaaaacattcccatcagacaccatgaa
gacaccctgctgcggcagctggctcagaaagttcctcacaaactgaacaaccccaagttc
aacgaccctcatgtgaagaccaacctgctgctccaggctcatctgtcccgcatgcagctg
agcgctgagctccagtcagacactgaggagatcctcagcaaagctgtgagactgatccag
gcctgtgtggacgtgctctccagtaacggctggttgagtccagcgctggctgccatggag
ttggctcagatggtcacacaagccatgtggtcaaaagactcgtaccttaaacaactaccc
cacttcacttctgaacacatcaagcgctgcacggacaagggtgtggagagcatcttcgac
attatggagatggaagacgaggatcgcactggtcttctgcagcttacagatgtacaaatg
gcggatgtggcacgcttctgtaaccgctatcccaacattgagctgtcatacgaagtggct
gacaaagacaacatcaagagtggaagtccagtggtcgtccaagtgcagttggagcgagaa
gaggaggttacaggtcctgtcattgctcctctgttccctcagaaacgtgaagaaggctgg
tgggttgttattggagaccccaaatcgaacagtctcatctcaatcaagaggttaactctt
caacagaaggccaaggtgaaacttgactttgtggcacctgttgttggtgtgcacaactac
acactgtacttcatgagcgatgcctacatgggctgcgaccaggaatacaagtttagcatg
gatgttaatgaagcagacagtgagggggaaagtgacagtgattaa
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integrated database retrieval system
