Cyprinus carpio (common carp): 109084582
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Entry
109084582 CDS
T05134
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109084582 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109084582 (pcf11)
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109084582 (pcf11)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109084582 (pcf11)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109084582 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
109084582
NCBI-ProteinID:
XP_042566800
Ensembl:
ENSCCRG00000036946
ENSCCRG00000044052
UniProt:
A0A9Q9ZMG9
LinkDB
All DBs
Position
A21:11663236..11672283
Genome browser
AA seq
1461 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLASSPAISSNHHVAAPTRFNISPKVTHT
IPAPQTKPWLPATSEKMTTRDPRLNRPGATAVNAKEQVMHKKESQVTPSFPTTSEKRGQV
SAERQSKLEKLRIPKKDNSAVEEKPKSKSVSPSGKGILVRPRGMESEHSKTVELNKKDPR
LHKQMHDRTDSKDEDVREKKRSSEKKDRDEGVKNLDHQKSSSTRGKLINGSLNKHERLET
FLKQEIKVNKANVRKRSRSRSQSPPLHSPKRKERQSPPKRKTRSITPTPKSGKARISKHL
HNDDAFPQSSLRDERSTKKSAPEPRRSKRPLDRAADQKDGPQLRISPAEHKDTKDGKRWR
SGWEENKNPKQSDSDLSHGRLGNQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNS
ASKRDLLRKASKRHADGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYQSKK
KQQGISDAELSYLEHKSKLRRTQLQRPVQKEDQSPLHEMFYQPQHEMTEQYSEISEVHKM
SGDAIKPDHEDPRRTNTPPSCTSSTFRNSPSPVNLDGTCGKSTGPPFERSSSPVEMDQQP
GDISPRFESPNSVHSGTGPDDGPVSVEVLPGHNNFLEQGTSGQNHGESPGNTPTHSSEGS
MALVNTXRHDGPNIPQRFDRYKSSQAPFDEPPSHMREPRLDGPPRPYAAPPRYEGSTGGF
DGSGGPVRYPGHRFDAPHRFERFPKTHERPVRFNNPPGSHRPMRYTEPRNVVRFDPQTPV
HFDHPIHQNRFANPPRFDNPHMQHGPPGYEEPRFPARLMNYDKQQGAVRFDSPSGGMRFK
NPVQPEPLRFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTIYDQTQGQAPVMNPAVPL
PXFNIPPMNTYGGPAQQFPMQQNVSQASNFSVTVPTSSDFQGSFRPAPFPGPGVGNVPQP
IMGAQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLLSTGIIKPAQTDSTTDSTS
ASQTLTVPEEEEEEEQEEDENVPDLTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTAS
QTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVH
EEVVQKTQEAAKEKEFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVEEKT
YHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEVSCSSIKEEPSEDNTDAP
TVKEEVQVKLEGESQTSAIIF
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaaacatctccaaagcctcctgcaccacaacctccagctccaagcttgacacaagaa
caactaataagacaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacaaaagctcagttggcttccagtcctgctatttct
tcaaaccaccatgtcgctgctcctacacgtttcaatatctcaccaaaagtcacacataca
attcctgcaccacagaccaaaccttggcttccagcaacatcagaaaaaatgacaaccaga
gatcctagattaaacagacctggtgcaacggctgtaaatgcaaaggaacaagtgatgcat
aagaaggagagtcaggtcacaccaagctttccgactacatcagaaaaaagaggacaagtc
tcagctgaaagacagagtaagttggagaagttgaggattccaaaaaaggataactctgca
gttgaggaaaagcctaaatccaagtcggtgtcaccatctggaaaaggtatccttgtcaga
cccagaggaatggagtccgaacattcaaagactgttgagctgaataagaaggacccaagg
ctacataagcagatgcatgacaggacagattcaaaagatgaagatgtcagagagaagaaa
agaagttcagagaagaaagatagggatgaaggtgtcaaaaacttggatcatcagaaatcc
agcagcaccaggggaaagcttataaatggctctctaaacaagcacgaaagacttgagaca
tttctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaaga
tcacaatcaccaccattacattctcccaaaagaaaagagaggcaatcacctccaaagaga
aaaaccaggagtattactccaacccccaagtctggaaaggctaggataagtaaacatttg
cataatgatgatgcttttccacagtcgagtctaagagatgaacgaagtaccaagaaaagt
gccccagaaccaagacgatcaaaaaggccacttgatagagctgctgatcagaaagatgga
ccacagctgagaatttctcctgcagagcataaagacacaaaagatggcaagagatggagg
agtggatgggaagaaaataaaaatcccaaacagtcagattcagatctctcacacggacga
ctaggcaaccagagacacaagacttggaacactaatcaaagaccatccacacctcgtaca
cctaaacagcatcgcttgagtgttgacagtaacatacaaataccagaagcacttaactct
gcaagtaaacgggatcttttaaggaaggctagcaaaagacatgctgatggtgaaatatcc
aatgacgaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaa
agacagcggtctgactcttgggatgaatcgtgtgatgagggagtatatcagtcaaaaaag
aaacaacaaggaatatctgatgcagagctttcttatcttgagcataaatctaagttaaga
agaactcagcttcagcgtccagtgcaaaaagaggaccagtcacctttgcatgaaatgttc
tatcagcctcaacacgaaatgacagaacaatacagtgaaatctcagaagtgcataaaatg
tctggtgatgccataaagcctgaccacgaagatcctagaagaaccaacacgcctccatca
tgtacaagttccacattcagaaattcaccaagcccagtcaacttagacgggacctgtgga
aaatccacaggaccgccatttgaacgctcatcatctccagttgaaatggatcaacaacca
ggagacatcagcccacgttttgaaagtcccaacagcgtgcactctggcacaggtccagat
gatggtcctgtaagtgtagaagttcttccagggcataataatttcttggaacagggaaca
agtggacaaaaccatggggaatctcctggaaatacaccgactcactcatcagaaggatct
atggcactggtgaacaccnnacggcatgatggaccaaatattcctcaacgatttgataga
tataagagttctcaagctccctttgatgagccacctagccacatgagagagccaaggtta
gatggtcctccgagaccttatgctgctcctccgcggtatgaaggcagcacagggggattt
gatgggtctggtggacctgtaaggtatcctggacatcgcttcgatgcccctcaccggttt
gaaagatttcccaaaacccatgaaagacctgtgagatttaacaacccaccaggatcacac
aggccaatgaggtacacagagcctcgtaacgtggtgagatttgaccctcaaaccccagtt
cattttgaccacccaatccaccaaaacagatttgctaatccaccaaggttcgataatcct
cacatgcaacacggtccaccaggatacgaggaaccacggttcccagctagactaatgaat
tatgataaacagcagggtgcagttagatttgatagtccatcaggtgggatgcgctttaag
aacccggtgcagcctgaacccttaagatttgatgcaccccccgtcatgccaagatatgac
ccacaaggtcctccaagatactgcggtccaaatattccaaaccagctcagaccacaggag
ccaacaatatacgatcaaactcaaggtcaggctcctgtgatgaaccctgctgtaccacta
cctnaattcaacattccacccatgaacacgtatggtggcccagcccaacagtttcccatg
cagcaaaatgtttctcaagcatctaacttcagtgtgacagtccctacatcatcggatttc
caaggttcatttagacctgctccattccctggtccaggtgttgggaatgttcctcagcct
attatgggagctcaacccttcatgccaccaaaccaaatatctttccagcctggttcacag
tttcagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgttatcaaaa
cttttatccactggaataataaaacctgcacaaacagactcaacgactgactccacctca
gcaagtcagactttaactgtgcctgaagaggaagaggaggaggaacaagaggaagatgaa
aatgtcccagatctgactggctttgttttggaggacatgaaactgagacacgacagcatt
atcaccaaactgtatacaggaatccagtgctattcctgcggcatgcgtttcactgcatct
cagacagatgtgtatgcagatcatttggactggcactacagacagaatcgttcagagaag
gacatcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggattgaa
tttgaggaaatcgctgatcttgaagagagggcaaagagtcagttctttgaaaaagttcat
gaggaggttgtacaaaaaactcaggaagcagccaaagagaaagagttccagagcgtaaag
gctgccgcagacgtcgttcatgagctgtgtgagatttgccaggagcagtttgagatgtac
tgggaggaggaagaggaagagtggcatctgaagaatgctatcagagtcgaagaaaagaca
tatcatccctcatgttatgaagactacaaaaatacatcctcctttgtggactgcacaccc
tcacccaataaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggt
gatgaggtgtcatgctccagtattaaagaagagccctccgaggacaatacggatgcacca
acggtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattatt
ttctaa
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integrated database retrieval system
