Cyprinus carpio (common carp): 109084652
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Entry
109084652 CDS
T05134
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109084652
09122 Translation
03013 Nucleocytoplasmic transport
109084652
03015 mRNA surveillance pathway
109084652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109084652
03041 Spliceosome [BR:
ccar03041
]
109084652
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
109084652
Spliceosome [BR:
ccar03041
]
Common components
Common spliceosomal components
Cap binding complex
109084652
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
AAA_11
FapA
GBP_C
Vfa1
EMC3_TMCO1
AAA_13
PIN_8
MG280
WIT1_2_N
Exonuc_VII_L
tRNA_bind_2
DUF1690
Importin_rep_6
Motif
Other DBs
NCBI-GeneID:
109084652
NCBI-ProteinID:
XP_042625851
LinkDB
All DBs
Position
A14
Genome browser
AA seq
800 aa
AA seq
DB search
MSRRRHSDEGDAGSQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEA
DLPNYKGKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKSN
LYSEALYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDIPQVRSDWYVYAVLSSLPW
VGKELYEKKDVEMDRLFNQIEGYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQVQKL
KKDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHSDDAVYPMPHVVFRMFDYTDAPE
VHVFLSVARSHSFQQFVIEENLHCIIKSHWRESNTCAAQLLSYPGKNKIPLNYHIVEVIF
GELFQLPSPPHIDVMYTALLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTICIDRLINW
FSHHLSNFQFRWSWDDWADCLTQDIEKPKPKFVKEVLEKCMRLSYHQRIVDIVPPSFSAL
IPANPVCSYKYEEETECPLPGLAMATTVSNAIKNRASNEEILIVLKDVPNPNQDDDDDEG
DGFNPLKIEVFLQTLLHLAAKSFSHSFSALAKFHEVLKNLTDSDEGKLHILRVLYEFWRN
HPQMISVLVDKLIRTQIVDCAAVANWIFSPEMAHDFTRFYVWEILHSTIRKMNKHVQKIQ
KELDEAKEKLEKHQNKKQRDSGDEEDMEKNSEDEEGQLEEQIERLQEKVESAQSEQKNLF
LVIFQRFIMLLTEHLVRCETSGVDINTTWYKNCIERLQQIFLMHHVIIQQYMGTLENLLF
TAELDHHILAVYQQFCALQL
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcgaaggcacagcgatgagggtgatgccggctcccagcctcacaaaaggagg
aggacgtctgaacccattgagattgaagaccgcctagagtcgctgatatgtcgagtggga
gagaagagtacgtcctccttagagagcaatttggagggtcttgctggtgtcctggaggca
gatcttcctaattataaaggcaaaatcctgcgcatcttatgtgctgttgcaaggcttttg
ccggagaagttgacggtgtacacaacactagtgggacttctcaacgctcgcaactacaac
tttggaggagagtttgtggaggccatgatccgacaacttaaggagacactaaaatcaaac
ctttactctgaggccctttatttggtgcgctttctcagtgacctggtgaactgtcatgtc
atcgcggctccatccatggttgctatgtttgagaactttgtcagtgtcacacaggaagaa
gacataccacaggtgcggtctgactggtatgtgtatgctgtgctgtccagtctgccttgg
gttggcaaggaactgtatgagaagaaggatgtggaaatggatcgcttgttcaaccaaatt
gagggatatttaaagcggcgtcagaagactcatgttcctatgctgcaggtgtggactgca
gaaaagccccacccacaggaagagtatctggactgtctctgggctcaggtgcagaagctg
aagaaggaccgctggcaggagcgtcacatcctgcggccttatattgcgtttgacagtgtg
ctgtgtgaagccctgcagcacaacctgccccctttcacacctccagcccactctgatgat
gctgtctaccctatgccccatgtcgtcttcagaatgttcgactacactgatgccccagag
gtgcatgtgtttctgtctgttgcaagaagccattcattccagcaatttgtgattgaggag
aacctgcactgcatcatcaagtctcactggagggagagtaacacctgtgctgcccaattg
ctcagctaccctggaaaaaacaagattccccttaactaccatattgtggaggtgatattt
ggcgagttattccagctgcccagtcctcctcacattgatgtcatgtacactgcgttactc
attgagctctgcaaactgcaaccaggctcattaccacaagttctcgctcaagccacagaa
atgatgtatatgaggctggacacaatgaacacaatctgtatagaccggctcatcaactgg
ttctcgcatcatttgagtaacttccagttcagatggagctgggatgactgggctgactgc
ctgactcaagacattgaaaagcccaaacccaagttcgttaaagaggttttggaaaagtgt
atgaggttgtcataccatcagcggatagtggacattgttcctccgagtttctctgccctg
atcccggctaaccctgtgtgcagctataagtatgaagaggagactgagtgtccattacca
ggattagctatggcaactacagtgagtaacgctattaaaaaccgggcgtctaatgaggag
atccttattgttctaaaagatgtccctaatccaaaccaggatgatgatgatgatgagggc
gatggcttcaaccctctaaagattgaagtgttcctgcagacgctgctccatttggctgcg
aagtctttcagtcattccttcagtgccctggccaagttccatgaggttctgaagaacctt
acagacagtgatgaggggaaactgcacatcctcagggttctgtatgagttctggaggaac
catcctcagatgatctccgtgttggtggacaagttgatacggacccagattgtggactgt
gcagctgtggccaactggatattttctcccgaaatggctcatgatttcaccaggttttat
gtgtgggagattctccattcgaccatccggaagatgaacaaacacgtgcagaagatccag
aaagagttggatgaggcaaaagaaaagctggagaagcatcagaacaaaaagcagcgggac
agcggcgatgaagaggacatggagaagaacagtgaggatgaggagggtcagttggaggaa
cagatcgagaggctgcaggagaaagtcgagtcggcccagagcgaacagaagaaccttttc
cttgttatattccagcgcttcattatgttactgacagagcacctggttcgctgtgaaacg
agtggcgtagacatcaacaccacctggtacaagaactgcatcgagaggctacagcagatc
ttcctcatgcatcatgtgatcatccagcagtatatgggcaccctggagaacctgctgttc
accgctgagctcgaccatcatatcctggctgtttaccagcagttctgtgctcttcagctc
tga
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