Cyprinus carpio (common carp): 109084916
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Entry
109084916 CDS
T05134
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109084916 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109084916 (polr1b)
Enzymes [BR:
ccar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109084916 (polr1b)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109084916 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
109084916
NCBI-ProteinID:
XP_042593360
Ensembl:
ENSCCRG00000045007
UniProt:
A0A8C2CG36
LinkDB
All DBs
Position
B13:25482337..25492029
Genome browser
AA seq
1132 aa
AA seq
DB search
MDLNKWCNLKSEPSLKHLTEAGFGVPKEKQRVPVQELVKAHIESFDQAVTDGLCRVVEAI
LPMEFMYKGDRISLSFVEAIIHTPAVSKGGISSDLRVFPAECRGRRCTYRGKLVADVSWS
INGVPKGIIKQSLGNVPIMVKSKLCNLHGLSPKELIEHHEEAEEMGGYFIVNGIEKVIRL
LIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVRGEHTAINMNLHYLDNGTVMVNFIYR
KELFFLPLGFALKALVDFSDYQIYQELIKGREENSFYKSCVSEMLRMVMDQGCMTKAKVL
NYLGERFRVKLNLPDWFTHEQCAHFLLDECLCIHLKSDVEKFYMLCLMTRKLFSFAKQEC
MEENPDSLMFQEVLTPGQLYLMFLKEKMAGWLVSVKLSLDKRSQRVGGLTADSMTKLFNT
GTDLTRAFEYLLATGNLQSKTGLGMLQDTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMR
TTSVRKLLPESWGFLCPVHTPDGEPCGLMNHLTAHCEIVAPMHPTTTLPALLCSLGVTAV
DGSPGQPYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGERKIPPWTEIVLVPQTG
KASLYPGLYLFTTPCRMVRPVRNLGLGKQELIGTFEQVYLNVGIFEEELEQGVTTHQELF
PHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQERSDNKLYRLQTPQSPLV
RPAMYDHYDIDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTDLIDLS
DKVKGDDSIVFGVKPGDPKVMDRLDADGLPFIGSTLTYGDPYYSYINLNTGQSYVTFYKY
QESCIVDNIKVCSNDTGTGRFKRICITARIPRNPTIGDKFASRHGQKGILSRLWPAEDMP
FTESGMCPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFKFSEESSALEHFG
EMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN
QPLGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLEK
PPPYWSNTRHRKTICLLCNKSDSIETVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggatcttaacaagtggtgcaatttaaagtccgaaccgagtttaaaacatttgacagag
gcggggttcggtgtcccgaaagaaaagcagcgcgtgcccgtgcaggagctggtgaaggcg
cacattgagtcttttgatcaggcagttactgatggattatgtcgggttgtggaggccatt
cttcctatggagttcatgtacaagggagacagaatcagcctgtcgttcgtggaggccatc
attcacacgccagcggtttctaaaggaggaatcagcagtgacctgcgggtcttccctgct
gagtgcagaggcaggcgctgtacctacagaggaaagctagtggcagacgtgagttggtct
attaatggcgttcccaaaggaatcatcaaacagtctctgggtaatgtgccgatcatggtc
aaatcaaaactctgcaaccttcatggtctctcacccaaagaactcatcgagcatcatgaa
gaagctgaggaaatgggcggctatttcatcgttaacggtatagagaaggtgattcgtctt
ctgatcatgccgaggaggaactatcccatcgcagtgtcaagaccaaagtttaagagcaga
ggacagggctacactcagtacgctatttcgatgcgctgtgtaagaggcgaacacacagcc
attaatatgaatcttcactacctggacaatggaacggtgatggtgaatttcatttaccga
aaggagctgttctttcttcccttgggctttgcactgaaggctctggtggacttctcagat
taccagatctaccaggagctgattaaaggtcgagaggagaactctttctataaaagctgt
gtctcagaaatgctgcgtatggtcatggaccagggctgcatgactaaagccaaggtgctt
aattacctgggcgagcgtttccgggtcaaactcaacctcccagactggttcactcatgag
cagtgtgctcacttcctgttagatgaatgtctgtgtattcacctgaagtcagatgtggag
aagttctacatgctgtgtctgatgacacggaagctcttcagctttgccaagcaggagtgt
atggaggaaaaccctgacagtctgatgttccaagaggttctgacaccaggccagctctac
ctcatgttcctaaaagagaaaatggcaggctggttggtatcggtaaaactgtccttggac
aagaggagtcagagagtgggaggactgactgcagatagtatgaccaaactcttcaacacg
gggacagatctcaccagagcctttgagtatctgttagccacaggaaacctgcagtccaag
acgggtctgggcatgctgcaggacaccggactgtgtgtcgtagcagataagctgaacttc
atccgttacctgtctcatttccgctgtgtgcacagaggagctgcattcgctaagatgagg
accacatctgtgaggaagctgctgcccgagtcctggggtttcctgtgcccggttcacact
cctgacggagaaccgtgcggtcttatgaaccacctgacagcccactgcgagattgtggcc
ccaatgcatcccacaacaaccctgcctgccctactctgctctctgggtgtaactgcggta
gacgggagccccggtcagccgtattcggactgttatcctgtcatattggacggggccatg
attggctgggtggaaaaagaagtggcaccatcagtcatcgaatctcttcgcagatttaag
gtgctgggagagagaaaaattccgccctggactgagatcgttttggttcctcagacgggt
aaagccagcttgtacccaggcctctatctgttcacgacaccctgtcgcatggtgaggccc
gtccggaacctcggcctgggcaaacaggagcttattggtacctttgaacaggtgtatctg
aacgtgggcatcttcgaggaagagctggagcagggagtgaccacgcatcaagagctgttt
cctcacagcatgttgagtgtggtggcagaattcatcccgttctctgatcacaatcagagc
cccagaaacatgtaccagtgccagatgagtaaacagacaatgggcttcccactgcattca
taccaggaacggtcagataataaactgtaccgtctgcagacccctcagagtcctctggtc
agacctgcgatgtacgatcactacgacattgataattaccctattggcaccaacgcgata
gtggctgtcatttcttacactggctatgatatggaagacgctatgatcgtcaataagtct
tcatgggagcgtggctttgctcatggttcggtttataagactgatctcatagacctgtcc
gataaggtcaaaggtgatgacagcattgtgtttggggtgaagccaggtgaccccaaagta
atggacaggctggatgcagacggattgccgtttatcggctccacgctgacgtatggagac
ccttactacagctacatcaatctcaataccggccagagttatgtaaccttctacaagtac
caggagagctgtatagtggacaacatcaaggtgtgcagcaatgatactggcactggccgc
ttcaagcgcatttgcatcacagcccgtattcccagaaaccccaccatcggagacaagttc
gccagcagacacggtcagaaaggtatcctgagtcgcctgtggcccgcggaggacatgccc
ttcaccgagagcggcatgtgcccggacatcctgttcaatccgcacggcttcccctccaga
atgaccatcgggatgctcatcgagagcatggctggaaaatctgcagccctccacggcctg
tgtcacgacgccacgccgttcaagttctcagaggagagctctgcgctcgagcacttcggc
gaaatgctgaaagccgcgggatacaactactacggcacggaacgcctctactctggcata
agcggcttggagctcgaggcggacatcttcatcggggtggtttactaccagcgcttgcgt
cacatggtctccgacaagttccaggtcagaactacgggagcgagagacaaagtgaccaat
cagccgctgggagggaggaacattcagggaggaatccgcttcggagagatggaacgggac
gcgctgctggctcacgggacgtcgttcctgctccacgaccggctgtttaattgctccgat
cgttctgtggcgcaggtttgcatggactgcggtagcctgctgtcgccgcttctggaaaag
ccacctccttattggtcaaatacacgccatcggaaaaccatctgcttgctgtgcaacaag
agcgactctattgagactgtgtccgttccttatgtgtttagatacttcgtagcagagctt
gcagcaatgaacatcaaaatcaaattagatgtcaagtaa
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