Cyprinus carpio (common carp): 109085809
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Entry
109085809 CDS
T05134
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109085809 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ccar03310
]
109085809 (roraa)
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
109085809 (roraa)
Nuclear receptors [BR:
ccar03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
109085809 (roraa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
109085809
NCBI-ProteinID:
XP_042608849
Ensembl:
ENSCCRG00000050949
UniProt:
A0A9Q9XVN7
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Position
B25:complement(16054774..16338239)
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AA seq
562 aa
AA seq
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MFMHVEGLPAFDLCLLEHGTDGAMQMHLSLSLSLSVFPVFLSLSLVPLGFRCTVTQREVA
CPVALGFLAPMETLCLSLNRGGQEEREMETDGRREKKGVGAGRRTQIEIIPCKICGDKSS
GIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRD
AVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTPTYGLSTNGLTELHDDLS
GYMNGHTPDGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPICDFTPGSGFFPYCSFTN
GETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQSKPREVMWQ
LCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDPQNNTVYF
DGKYAGPDVFKSLGCDDLISSVFEFAKNLCSMHLSEDEIALFSAFVLMSADRSWLQEKVK
VEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRHTEKLTAFKAIYPDIVRA
HFPPLYKELFGSDFEQSMPVDG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtttatgcatgtggaaggtttgcctgcatttgatttgtgtttgttggaacacggcaca
gacggtgcaatgcaaatgcacctctctctgtctctctctctctccgtctttcccgtcttc
ctttccctgtctctcgttcccctgggattcaggtgcacagtgacacagcgagaggtggcg
tgccctgtggctctaggcttccttgctccgatggaaacactttgcctgtcactgaacaga
ggaggacaggaggaaagagagatggagacagacggaaggagagagaaaaagggtgtcggg
gcagggcggaggactcaaatcgaaataattccctgcaagatctgtggagacaaatcatca
ggcatccattacggcgtgataacgtgtgagggctgcaagggtttcttcaggaggagtcag
cagagcaatgcggcgtactcatgcccacgtcagaagaactgcctgattgaccgcaccagc
cggaaccgctgccagcactgcaggctgcagaagtgtctggccgtgggcatgtcacgtgac
gcggtgaagtttggccggatgtctaagaaacagcgggacagcctctatgcggaagtgcag
aaacaccggctccagcagcaacagcgggaccaccagcagcagcccggtgaggccgaaccc
ctcaccccaacctatggcctctccaccaatggcctgaccgagctccacgatgacctgagt
ggctacatgaatggccacacacccgacggcaccaagcccgactccggtgtcagcagcttc
taccttgacattcaaccctcacctgaccagtccggcctggacatcaacggtatcaagcca
gagcccatctgcgacttcaccccgggctcgggcttcttcccctactgttccttcaccaat
ggggagacatcccccaccgtttccatggctgagctggaacatctggcccagaacatttcc
aagtcccacatggagacgtgtcagtacctgagagaagaacttcagcagatgacctggcag
gcattccttcaggaggaggtggagagctaccagagcaagcccagggaagtcatgtggcag
ttgtgtgccattaaaatcacagaggccattcagtatgtggtggagtttgccaagcgcatc
gacggcttcatggagctctgtcagaatgatcagatagtgcttctcaaagcaggctctttg
gaggtggtgtttatcagaatgtgccgtgccttcgaccctcagaacaacacagtctatttc
gacggaaagtatgccgggcctgatgtctttaagtcattaggttgcgatgacttgatcagc
tctgtcttcgagttcgcgaaaaacttgtgttctatgcacctctctgaagacgagatcgcc
ctgttctccgccttcgtgttgatgtctgcagatcgatcctggctccaggagaaggtgaag
gtggagaaactccagcagaagatccagctggccctccaacatgttctacagaagaaccac
agagaggacggcatactgacaaagttgatatgcaaagtctcaacactgcgagccctgtgc
agccggcatacggaaaaactgacggcgttcaaagcaatatacccagacattgtccgcgcc
cacttcccccccttgtacaaggagttgttcggatcagactttgagcagtccatgcccgtt
gacgggtag
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