KEGG   Cyprinus carpio (common carp): 109086803
Entry
109086803         CDS       T05134                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109086803
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109086803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109086803
   03041 Spliceosome [BR:ccar03041]
    109086803
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109086803
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109086803
Spliceosome [BR:ccar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109086803
SSDB
Motif
Pfam: LSM RimP_C
Other DBs
NCBI-GeneID: 109086803
NCBI-ProteinID: XP_018956634
Ensembl: ENSCCRG00000046208
UniProt: A0A8C1HYN3
LinkDB
Position
A4
AA seq 96 aa
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgtctaccgctcttgagagttacattaaccggacggttgccatcgtcacttcagacggg
agaatgattgtggggacgctaaagggcttcgatcagacgatcaatctcatcctggatgaa
agccatgagcgggtgttcagctcttcccagggagtagagcaggtggttctgggactgtat
attgtcagaggcgataatgtggctgtaatcggtgaaatcgatgaagaaacggattctgcg
ctggatcttggaaacataagagcagaaccgctcaattctgtggtgcactga

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