Cyprinus carpio (common carp): 109087340
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Entry
109087340 CDS
T05134
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109087340 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109087340 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
ccar03036
]
109087340 (si:dkey-219c3.2)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109087340 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
109087340 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
109087340 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
109087340
NCBI-ProteinID:
XP_042571362
Ensembl:
ENSCCRG00000038902
UniProt:
A0A9Q9VUD0
LinkDB
All DBs
Position
A25:10418823..10462227
Genome browser
AA seq
972 aa
AA seq
DB search
MMSLRFPQCFSSKTTHAPCAFLKRLSKMAGVPDPLEDMLYSEVDEKAVSDLVGSLESQLG
GQNKAVGSQGDTRRPSNALNPHLGKLLPAQVGTTLEQQRQPERNQEGNSQENGPDRIPAS
GSVPSTSNLPSTSANLVTAANRVQYHSSNPSTCSSDAAPTDSHPNTNHIASAVRTVPARI
QPVNGSSGTLNSSVIASAPASVNGIDIGSGVGNSKSNMSAPASTNTAFVSAQPNSTLPHA
NVSLESPANPTIALHRPPNTITSVVHNGGDPKVSGLPVQGAGLVPTSVAFTNTEPKSDLQ
NQIKAIVPNKLPGTPVGLRPSTPTQIIVSSSPVVTSLPVASTPSVLAKPATTALVGQPTT
LLRPGTPIQGTATAVPPQRPGAPTTQLIVRPQQQTTIQLPPGFTIPPGMVLVRTEAGQLA
LVPQQVLAQAKAQNQNKGTLSPRPATPTAGTTFRVTTPVAQQKTAVVTITSAQKPTTTVI
TAGARVQPAPQTVLKPSVSPQSPITTTAAAPANRAPVLSQEMQENVKKCRNFLATLIKLA
SHNSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPALRLT
LLNSQQSLTQLTQISTTSTPVTANTIKAPTPTALPTTVSTIRPAAALAPTTTMAVKRPGV
QATPTRMPVVITQTVRAQGAVGTPLQVRSPMGVAVQALANQKQKLNDPGGGTFRDDDDIN
DVASMAGVNLNEENARILATGSDLVGTQIRSCKDEAFLPASLLHKRLLETAKKFGVTEVS
METVTLISHATQSRLRSMLENVSAVAQHRVDSCKDEELYEQTSDVRTQLKFFEQLEKIEK
QRKDDEERELLMKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPR
KKRKLDSPGASAGAEFPAGSSGSATGSTSSSTSSVRQTRQRVTRVNLRDLIFCLEQERTT
ARSMLLYKALLK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattacgtttcccacaatgcttcagcagcaaaacaacgcacgcgccgtgcgca
tttctcaagcgtctatcaaagatggcgggcgtccccgatccactggaagatatgctctac
tccgaagtggacgaaaaagcagtcagtgacctcgtaggctcgttagaatcgcagttaggt
ggacaaaacaaagcggtcggttctcaaggcgacaccaggagaccctcaaacgcgctaaat
ccacacttggggaaattgctgcccgcccaagtaggaacaacactggagcagcagcggcag
ccagagcgaaaccaggagggaaactctcaagaaaacggtccggacaggataccggcgtcc
ggttccgtcccgtccacctcgaacctgcctagcacctctgcgaatttggttacagccgcg
aaccgggtgcaatatcattcatcaaatccatcaacttgttcaagtgacgcagcacctaca
gactctcaccccaacacaaatcacattgcgtctgctgtccggacggttcccgccagaata
cagcctgtgaacggaagcagtggcacgctaaactcttctgttatcgcttctgctcctgct
tctgtaaacggtattgacattggttcaggtgtaggtaatagtaaaagcaacatgtctgct
cctgctagtacaaatactgcttttgtgtctgctcagcccaacagcacactgccacatgcg
aatgtgtcactagaaagtccagcaaaccccaccattgcactgcacaggcctcctaacacc
atcacaagtgtggtacacaacggaggtgaccctaaagtctcaggattgcccgtgcagggt
gccggtcttgtgcccacctccgtggcattcacaaacacagaacccaaatctgaccttcaa
aaccagattaaagccatcgtcccgaacaagctccctgggactcccgtagggttgcgcccc
agcactcccactcagattatagtgtcgtccagtccagtggtgacctcacttcctgtggca
agcacaccctctgtccttgcaaagccagcaacgactgctctcgtaggacagccaacgacc
ctgttgagacccggtacgcccattcaggggacggcgactgcggtgcccccacagcgtcca
ggggcacctacgacccagctgatcgtcaggccgcagcaacaaactaccatccagctaccg
ccgggattcaccatacctccaggtatggtgctggtacgcacggaggccggtcagctggca
ctggttcctcagcaggtcctggcgcaggccaaagctcagaaccaaaataaaggcaccctg
tcaccgagacctgctacacccactgctggaacgactttcagagtcactacacctgttgcc
cagcaaaaaacagcagtggtaacaattacctcggctcagaagccaaccaccacagtcatt
acagcaggggcccgtgtgcagcctgcgccgcagacagtcctcaagccctccgtgtcccct
cagagtcccatcaccaccactgctgctgccccagctaaccgagcccctgtcctctctcag
gaaatgcaagagaatgtaaagaagtgcaggaacttcctagcaacactcatcaaactggca
tcccataattccccctcgccggaaacatctcggaatgtgaaggcactagtgcaggatctg
ctggatgcaaaaattgagcctgaggagtttacaaatcgccttcagacggagttgaaatca
tctcctcaaccgtacctgatcccttttttgaagaaaagcctgcctgctctgcgtctgact
cttctgaactcccagcagtctttaactcagctgactcagatctctactacatccacccca
gtgacggcgaatacaattaaagctccaacaccgaccgcactgcccaccactgtatctacc
atcagaccagctgctgccctggctcccactaccaccatggctgttaagaggcctggggtt
caggctactccaacaaggatgccagtggtgattacacagacagttcgtgctcaaggtgct
gttgggacacccttgcaagtgaggagccccatgggtgtggctgttcaagccttggccaat
cagaaacagaagctgaatgaccccgggggtgggactttcagggatgatgacgacatcaat
gatgtggcatccatggctggtgtgaacctaaatgaggagaacgcccgtatcttggccacg
ggttcagacctggtgggcacccagattcgttcctgtaaggatgaggccttccttcctgcc
agcctgctccacaaacggctcctggagactgccaagaagttcggcgtgacggaggtgtca
atggagacggtcactctcatttctcacgccactcagtccaggctgcgctccatgctggag
aatgtctctgccgttgcgcaacaccgcgtcgactcctgcaaagatgaggagctgtacgag
cagacatcagatgtgcggacccagctgaagttctttgagcagctggagaagattgagaag
cagaggaaagatgatgaagagcgggagctgctaatgaaagccgcaaaaagtcgctcgagg
caggaggatcccgaacaggctcggcttaaacagaaagctaaagagatgcaacagcaggaa
ctcgcccagatgagacagcgagatgccaacctcacagccctagccgccatcggaccccgc
aagaaacgcaagcttgactctcctggggcctcagcaggtgcagagtttcctgcaggctcc
tccggatcagcgaccggttctacctcatcctccacatcctcagtccggcagacccggcag
cgtgtcacccgggtcaacctcagggacttgatcttctgcttggagcaggagcgaaccaca
gccaggtccatgctgctctacaaggctcttctgaagtag
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