Cyprinus carpio (common carp): 109087597
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Entry
109087597 CDS
T05134
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109087597 (upf1)
03015 mRNA surveillance pathway
109087597 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109087597 (upf1)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109087597 (upf1)
5.6.2.5 RNA 5'-3' helicase
109087597 (upf1)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109087597 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109087597 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109087597
NCBI-ProteinID:
XP_042569054
Ensembl:
ENSCCRG00000035084
ENSCCRG00000051892
UniProt:
A0A9Q9VQ42
LinkDB
All DBs
Position
A2:26639641..26663188
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGILPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIRKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLI
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPIPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaacgcagggccagacccagagccaactcgacaaccaggtgaacggg
cctgatggcattctgcccaacggagaggatgcagtggtgaagaccagccaacttctggcc
gagctgaactttgaagaggatgaggaagatacttactacactaaagacttgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgcgtggtttattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcacaaggacggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaacgtcttcctgctcggcttcatcccggctaaagcc
gactccgttgtggtgcttctctgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccgacagcgacgctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgatacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcagggagac
gagatctgtctgcgctataaaggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccgcataacttccaggtggactttgtctggaagtcaacatctttt
gaccgaatgcagagcgccttgaagacgtttgccgtggacgagacctctgtgtccggctac
atctaccataaactgctgggtcatgaggtggaggacgttatcattaaatgccagctgccc
aaacgcttcactgcacaaggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcctccgggaaccggaaagactgtc
acttctgccaccatcgtctaccatctggccagacagggcaacggtccggttctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatagattcacccgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaagctgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagtttcgctccatcctcattgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccttcaaatatcttctacgagggctct
ctgcagaacggagtcaccgctgctgatcgcatcaggaaaggctttgactttcagtggcct
cagcccgataagcccatgtttttctacgtgacccagggccaagaggagatcgcgagttct
ggcacctcctatctcaacaggaccgaggcgtctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagatcggcatcattacgccctacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccaggggagagagaaggacttcatcatcctgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccacgacgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctgaactactacaaggagcagaaggttctggtggaa
ggaccgctgaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctgatc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgacgcgagggaggcc
atgattcctggatctgtgtatgaccgcagcagcactgggcgtccatctaatatgtacttc
cagacacatgaccaggtcggcatgatcgggactgggccgaacccgatgggctccatgaac
atccccatcccgttcaatctggtcatgcctcccattcctccgcctgggtacctgggccag
gtgaacggacctgctgccggtcgtggtgctcctaaaggtaagactgggggtcgcggaggg
cgtcagaggaaccgtggcactggtaatcacggcagcgggcaggccaacatgccgaacagc
caggccagtcaggacctggtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagccggagctctca
caggatagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcccaggat
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
