Cyprinus carpio (common carp): 109088331
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Entry
109088331 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109088331
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109088331
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109088331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
ATPase
nSTAND3
PhoH
AAA_22
AAA_16
Ank_4
ABC_tran
Ank_5
Motif
Other DBs
NCBI-GeneID:
109088331
NCBI-ProteinID:
XP_042579270
UniProt:
A0A9Q9W9E6
LinkDB
All DBs
Position
B5:complement(36143651..36170062)
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AA seq
1379 aa
AA seq
DB search
MSRGAQKSHTNPSKHSAPVKARGLRDIRIDEEVKIAVNIALERFQYSDQKELDFPSSLTN
SERAFIHRLAQSLGYASKSRGKGSSRCLTVRKKDGTEASRSIMTFNLSHNSKHMVQSLLQ
RFPITNKERSELQPRTERAVFTSPDASDSKSRTSGRLSHGISQVPQKRGPSELDCFRRAL
PVYERQEEIIQTIRENQVVLVLGETGSGKTTQIPQFLLDDCCRSGIPCRIFCTQPRRLAT
IAVAERVAAERGEKIGQTVGYQIRLESRVSPKTLLTFCTSGVLLRTLMSGDEALSTVTHV
IVDEVHERDGLTDFLLTKMKELVQKTPSLKLILSSAALDVNLFVRYFGACPVIHIKGCPY
EVKQLFLEDILRTTGYINKDMMKYKKEAQREERQQTSLTEWCDARLDVLQPEAPREKTHA
CVLQENDLLDDGGDSVFSQMSEKDVATLEPWLLREMDACISNIFLNQDADAFVQLFNLIL
NENISVDYRHSETSVTPLMVSAGRGFLSQMEQLLSMGANANIKASNGWTALDWARHFNQT
EAVDLLESHIWCVEAGQLDEASLVQTAASELNPEDQELLKAYHHSFDDEKVDLDLILHLL
FTIYQSSDEGAVLIFLPGYDEIVSLRDRILFDDKRFTDHQQRFQVFILHSSMQTSDQKKV
LKNTPKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDALSNVTMLKMVWISKASA
LQRKGRAGRCRPGICFHLFSRLRFNNMLEHQVPQLLRMPLQELCLHTKLLAPITCPIAEF
LSKAPEPPHLHTVKHAVQMLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKC
LDPILTIACTLAHRDPFVLPAQAAQKRAAMLCRKRFTANTFSDHMALLRAFQAWQKARSD
GWEGRAFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVK
AALVAGMYPNLIHVERDSLSLMGSREKKVRLHPTSVLSQPQYKKIPPANGQAAAVDSLPT
DWLIYDEMTRAHRIASVRCCSVVTPLTVAIFAGSAKLPSSALQEPAVHRGADGENDSSDS
EVEDRSSSRLAHISIDDWLHFKLHRETAEQVFGLRQRWQSLFLRRIRSPSKSCSQLDEAT
IRSLVSVLLAEEQSAGLQQPTGIGQRPRPMTSDDPPQTPAGRSAAEQERSSPDRPRLASQ
LKNHRALHSKHLGDESGPEKSTEGPSSPSSGTRCSSPSTHAPRSSVRYFIMKSSNMRNID
LSQQRGIWSTTPSNEHKLTRAFVESSAVFLIFSVQGSGHFQGYARMVSAVSGERCLDWGS
SGLGGVFGVEWIRKESLGFQLTQQLLNPWNDNKRVQISRDAQELEPQTGSQLLQLWERI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcggagcgcagaaatcacacacgaacccatctaaacactcggctcctgtgaag
gccagaggactccgagacatccggatcgatgaggaggtcaaaatcgccgtgaacatcgct
ctggagaggttccagtacagcgaccagaaagagctggatttcccttcttcattgacaaac
tctgagagagcgttcattcatcggctcgctcagtccctgggttacgcctctaaaagcaga
gggaaaggctccagtcgatgtcttacggtgaggaagaaggacgggacggaggcgtctcgc
tccatcatgaccttcaacctctctcacaactccaaacacatggtgcagagcctcctgcag
aggttccccatcactaataaagagcgcagtgagctgcagccgcgcaccgagagagccgtc
ttcacctctcctgacgccagcgacagtaaaagcaggaccagcggtcgtctgagtcacggg
atttctcaggttcctcagaagcgaggcccgtctgaactggactgcttccggagagcgctg
cccgtgtacgagcgtcaggaggagatcatccagaccatcagggagaaccaggtggtgctg
gttttgggtgagaccggctctggcaaaaccacacagatcccgcagttcctgctggacgac
tgctgtcggagtgggattccctgccggatcttctgcactcagcccaggaggctggcgacc
atcgctgtggcggagcgtgtggcggcggagcgcggcgagaagatcggacagaccgtcggc
tatcagatccgtctggagagcagagtttctcctaaaaccctgctgacgttctgcacgagt
ggagttctgctgcggacgctgatgtccggagacgaagccctgtccaccgtcacgcatgtc
atcgtggacgaggtgcacgagcgagacggcctgaccgacttcttactcacgaagatgaag
gagctggtccagaagacgccgtcgctgaagctcatcctgtccagcgccgctctggacgtc
aatctgtttgtcagatacttcggagcctgtcctgtcattcacatcaaaggttgtccatac
gaggtcaagcagctctttctggaggacatcctgcggaccaccggatacatcaacaaagac
atgatgaagtacaagaaggaggcgcagagagaggagaggcagcagacgtctctcacagag
tggtgtgacgctcgtctggacgtcttacagccggaggctccgagggagaagacgcacgct
tgtgtcctgcaggagaacgacctgctagacgacggcggcgacagtgtcttcagtcagatg
agcgagaaggacgtggccacactggagccctggctgctcagagaaatggacgcctgcatc
tccaacatcttcctgaaccaagacgccgatgccttcgtgcagctcttcaatctgatcctg
aacgagaacatcagcgtggattacagacacagcgagacgagtgtcacgccgctgatggtg
tccgccggacgaggttttctcagtcagatggagcagctcctcagtatgggtgcgaacgcc
aacatcaaagcctccaacggctggacggctctggactgggccagacacttcaatcaaact
gaggctgtagatctgctggagtctcacatatggtgtgttgaagcaggtcagctggacgag
gcgtctctggttcagacggcagcatccgagctgaatcctgaggaccaggagctgctcaaa
gcgtatcatcacagcttcgacgatgagaaggtcgacctggatctcatcctgcacctgctc
ttcaccatctaccagagctctgacgagggcgcagtgttgatattcctgccgggctacgat
gagattgtctctctgagagaccgcatcctctttgatgataaaaggtttacagatcaccag
caaaggtttcaggtgttcatactgcactctagtatgcagacgtcagaccagaagaaggtt
ttgaagaacacgccgaaaggtgttcgcaaaataatcctctcgaccaacatcgcagagacc
agtattaccgtcaacgatgttgtttttgtcatcgactccggcaaagttaaagagaaagcc
tatgacgctctgagtaacgtgaccatgctgaagatggtgtggatatcgaaggccagcgct
ctgcagaggaagggcagagcgggccgctgcagaccgggcatctgtttccatctcttcagc
cgtctgaggttcaacaacatgctggagcatcaggttcctcagctgctgcgcatgccgcta
caggagctgtgtctgcacactaaactgctggcgcccatcacctgtccgatcgctgagttc
ctgtctaaagcaccggagccgcctcacctgcacacggtcaaacacgccgtacagatgctg
aagaccatcgacgccatggacccctgggagaacctgacggagctgggctatcacctcgct
gacctgcccgtggagccacatttagggaagatggttctgtgtgcggtggtgctgaagtgt
ttggaccccatcctcaccatcgcctgcacactcgctcacagagaccccttcgttcttccc
gctcaagccgctcagaagcgcgccgccatgctgtgcaggaaacgcttcaccgccaacacc
ttcagcgaccacatggctctgctccgcgcctttcaggcctggcagaaggctcgcagtgat
ggctgggaagggagagccttctgcgagaagaacttcctctctcaggccaccatggagatc
atcgtcgggatgcgaacgcagcttttgggacagcttcgagctacagggttcgtgcgagcg
aggggcggcggggacatccgtgatgtcaatcagaactctgagaactgggccgtggtgaag
gcggcgctggtcgctggcatgtatcccaacctgatccacgtggagcgggacagtctgagc
ctcatgggctccagagagaagaaggtccgcctccaccccacatctgtcctcagccagccg
cagtacaagaagatccctccagccaatggtcaggcggcagccgtggactccctgcccact
gattggctgatttatgatgagatgacccgcgctcacaggatcgccagtgtccggtgctgc
tctgtggtcacacccctcaccgtcgccatcttcgcaggaagtgccaaactgcccagctcc
gccctgcaggaacccgccgtccacagaggagctgatggtgagaatgacagcagtgatagt
gaggtggaggatcgctccagctctcgtctggctcacatcagcatcgatgactggctccac
ttcaaactccaccgagagacggcggagcaggtgttcggtctgaggcagcgctggcagagt
ctgttcctgcggaggatccgctctccgtcgaagtcctgctctcagctggacgaggccacc
atccgctcgctggtgtcggttctgttggccgaggagcagagcgccggcctccagcagccc
accggcatcggccagagacctcgacctatgacctccgacgatcccccgcagacgccagcc
ggccggagcgcagcggagcaggagcgcagcagcccagacaggcctcgcctggcgtctcag
ctgaagaaccacagagcgcttcacagcaaacacctgggagacgagagcggccccgagaag
agcaccgaggggccctcgtccccgtcctcaggaacacgctgctcgtctccgtccacacat
gcgccgcgatcgagcgtccgctacttcatcatgaagagcagtaacatgaggaacatcgat
ctgtcccagcagcggggaatctggtccacgacgcccagcaacgagcacaagctgacgcga
gccttcgtcgagagcagcgccgtcttcctcatcttctccgttcagggatccggacacttc
cagggttacgcgcgcatggtgtcggcggtcagcggcgagcgctgtctggactggggttcg
tccggtctgggcggtgtgttcggggtggaatggatccgtaaggagagtctggggttccag
ctcacgcagcagctgctcaacccctggaacgacaacaagagagtccagatcagccgagac
gctcaggaactggagccgcagacaggaagtcagttactgcagctctgggagcgaatctga
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integrated database retrieval system
