Cyprinus carpio (common carp): 109088386
Help
Entry
109088386 CDS
T05134
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04137
Mitophagy - animal
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109088386
04137 Mitophagy - animal
109088386
04148 Efferocytosis
109088386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109088386
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109088386
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
Hl_ALG44
ARM_TT21
PAS_2
Motif
Other DBs
NCBI-GeneID:
109088386
NCBI-ProteinID:
XP_042593187
Ensembl:
ENSCCRG00000044316
LinkDB
All DBs
Position
B13
Genome browser
AA seq
727 aa
AA seq
DB search
MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYDMARELPLPHSVTSNLDKASVMRL
ALSYLRLRKLLNTDVLNVESELDSQWNSSYLKALDGFLMVLSADGDIVYLSENVSKCLGL
PQIDLTGHSVFEFTHPCDHEELREMLAYRTGLSKKAKEQHTNRSFLLRMKCTLTSRGRTV
NVRSASWKVLRCSGHIHTTDGIKKGVCEEKNVCSTYLVLICESIPHPANIEAPLDSRTFL
SRHTLDMRFTYCDERITELLGFEPVDLLQHSVYEYYHALDSDHMTKTHHNLFVKGQVCTG
QYRLLAKAGGFAWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTKIK
QEQEEHHEESLGTEVTMEELKEEAKAKNEKKAECVREELHDSLKGEPEALTVADPVLTLD
ITSTESALSVLTEIPLYNDVMLPSSSVLLPLSPFSPPCSSLNEDDASTAHLQPDDFQISQ
SSPPDSSRSQVDLPVDTELSDQLKPDQVEKLFSMDIESKTSFNTQGVGLDLEMLAPYIHM
EDDFQLRTVSPAESMCSSPGSALELTPSSSTQTAPALPAAPLVLVSCDTVPQNTRTTKQY
NSREIIQDSDISSKCQTNPKLLKRKLETIPLSEAIRLGSVLQVVTDFPEKKVRKSDTSSS
EGIRHATILLLPSDVASRLLSRSSEGGAVTMPLPQLNRYDCEVNVPVTGRQHLLQGEELL
CALDLLI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctgggaaaaaaagagtgagttcagagcgaaggaaggagaaatcc
agagatgcggcacgttgtcggagaggaaaagagtcagaggtgttttatgacatggccaga
gaactgcccctcccccacagcgtcacctctaacctggataaagcatcagtcatgagactc
gcactgagttacctgcgactgcgtaaactactgaacacagatgtattgaatgtggagtct
gaattagattctcagtggaacagttcatatctgaaagctctggatgggtttctcatggtt
ctttctgctgatggcgacatcgtctacctgtcagagaatgtcagcaagtgtctaggcctt
cctcagatcgacctcactggacacagtgtgtttgagtttactcatccatgtgaccatgag
gagctcagagaaatgctggcatacaggactggtctgtctaagaaagcaaaggagcagcac
acaaacagaagttttctattgaggatgaaatgtacactgaccagtagagggcgcactgtc
aatgtcagatctgcctcctggaaggtgctgcgctgttcgggccatatccacacaacagat
ggcatcaagaagggtgtgtgtgaggaaaaaaatgtgtgttcaacgtacctggtgcttatc
tgtgagtctattccccacccggcgaacattgaggctcctctggattctagaacatttcta
agccgccacactttagatatgcgcttcacctactgcgatgagaggatcacagagctgttg
ggttttgagccagtggatctgttgcagcattctgtgtatgaatactatcacgcgctggat
tctgaccacatgaccaaaacacaccacaacctgtttgtgaagggacaagtgtgtactgga
caataccggctcctggctaaagcaggagggtttgcttgggcagagactcaagccactgtg
atctataacagtaaaaactcccagccacagtgtgtggtctgcgttaactacatcctcagt
ggcattgaacagcccaaacaaatcctgtcccttcagcaaaccaacagcacaaaaataaaa
caggaacaggaagagcaccatgaggagtcactcggaactgaagtgactatggaagagttg
aaagaagaggcaaaggcaaagaatgagaagaaagcggagtgtgtgagagaggagctacat
gacagtctgaagggggagccagaggcactgactgtagcagaccctgtcctcactctggat
atcaccagcacagagtccgcactctctgtgttgacagaaattcctctctacaatgatgtt
atgttgccctcttcaagtgtcctgctacctctctcaccattctctcctccctgctcctcc
ctaaatgaagatgatgcctccacagcccatctacaacctgacgacttccaaatctcacaa
tcttcgcctcctgattcttccagatcccaggtcgatctccctgtggatacagaattaagt
gaccagctaaaaccggatcaggtggagaaactattttccatggatatagagtccaagaca
tcctttaatacacagggagtgggtttggatctggagatgttagctccatacattcacatg
gaagatgatttccagctgcggactgtttctccagccgagtcgatgtgttccagcccgggt
tcagcacttgaactgaccccctccagcagcacacaaactgcccctgctctcccagcagcc
cctctagtcttagtgtcctgtgacactgttccacaaaacactagaaccacaaagcagtac
aacagcagggaaattattcaagacagtgatatttcttctaaatgtcagaccaacccaaag
ctactcaagagaaaactggagaccatacctctgtctgaagcaataaggctgggttctgtg
ctgcaggtggtgactgattttccagagaaaaaggtcagaaaatcagacacttcatcatca
gaagggattcgtcatgccacgatactgttgctgccatctgatgttgcgagtaggttattg
agcagatcgtcagagggtggagccgtaacgatgcccctcccccagcttaaccgttacgac
tgtgaggtaaatgtgcctgtgactgggcggcagcacctgctacagggggaggagctactg
tgtgccttggaccttcttatttaa
DBGET
integrated database retrieval system
