Cyprinus carpio (common carp): 109088892
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Entry
109088892 CDS
T05134
Name
(RefSeq) structure-specific endonuclease subunit SLX4-like isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
109088892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccar04121
]
109088892
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109088892
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
109088892
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
109088892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
109088892
NCBI-ProteinID:
XP_042605788
UniProt:
A0A9Q9XPT8
LinkDB
All DBs
Position
B22:27798482..27808300
Genome browser
AA seq
1773 aa
AA seq
DB search
MDDSDQDFTDLCSRLLKRVKKKGAGGSGDEKRPTTRDEQPSSPSSRRNPPKRRKKTDRDV
TKTEIKRAINGRTQSAGSGDVSQPDPEESGTGRAKDAVIRRMQRFKRASPERLLHAETER
PTSTESDGNHLPTAGTQLTEDVSSDEALALQLQQALDREAQSSRDVEDEGLFFCQLCQKD
LSAMSPPLRTQHINRCLDASESSAPSASHQSHPRPRVPECPICGKSFKSEKSRSVHLKRC
STDMGVKPNDLLQALRRQAAETACDYTTDQSQQLGSGTITRRDGMPVKKRTRRKAQKLDE
DTMVALALSRSLLEQEMEEEREILAPVLQWKPGAGKGRGKRRKGASPVHPPLLLILDAQT
ALNRLQERVSSLLLRSRPPSPPTPTLSPSALPLHPQAPLWVKSALHGGGPDAVSEFYTSE
LSNFIQPCVAPEREKVTSLEVTPVKKFPDEVDSVQEKLSDPSPAQHQTTRPLTPCSGTPG
SQALQDLMELAEEGMTLTQYGYTTHYKSVKDNAVNELPSSGFVPETNDKTTAKETSVYVS
KLASDLSSMVNNPQLSDVQLQVDSGDVFFTHSFMLYTRCPLLANMVHDSGFGVQEEGMPV
SQRVLLGNVLGEAVLALLQYLYTAHCPLTHTLLPHIQELADRFCLAELQQQCEEYSGGVG
ENTREESEGIFPAPQPHLGDQEDQNLAEKNFLELLQSMWQHEDSEEEDDFKETAGEERDL
EEEQEKEDGEKEDRVDEEELDEIYEFAATQRKIETMLEATTETEEEEGDANTSLRNEKKD
ETEDRNETESLSEKSAGSCHSNKQGVDGMEAAMVTSPMEETLKNPNSETERVCLIQELDE
NRDSDASLDNSYDCLFSQSVGEYMEPSQTPASCSQQQRYKPSHTVQQNTPAPFHPSCVSE
VIDLSISPPPSSDVSDETNFPLPGLSPVPHEGEHTDKSPLTKDNSVCQEIKNPASPPESQ
SKRVELIVLSDSCKQMHQYCYLNAPTTKCALTPRSPFESPSEPLQTSTSYVCKVTENSFK
ESGSQAHAGKRVDASKQVSTDTEARSDRSEHCSPGIANESVFDGSAEVSWLIPATPVPST
RCSSSQTCISMRRTQLFPKSSSSSSSSSVSGGFKPASFDSSSSSCIKEKPVPLSELPKSD
LSPFKECHSTDTDRSPGYQRPLHHLRLSQVPSTDVSDGSHIGSIMGHPTQGVSKPSSSTP
LHSDSSLQRQILFGSPVVDDCDVRLRDSRGNSRFFSSQGKIGLVSLQLSSSSPSKTPEKK
QGSSLEQGCSSPSPNSQSYSHPERWKKRENDGVERMELGENPNQSNEELVDVAGNSFSDM
DGSGRSGEENPNQSVDEVVDIARNSFSDMDEPGRRAGEENPNQSVDEVVDIAGNSFNDMD
GSGKVGEEKPNQSVDEVVDVAGDSFCGMDEPPIAFDDSWGLDGGVGNQKPCFSLRLDSSG
GTVSPPGLEGKGPMSRSHLDSGACTKTPDPSPGPFNHSLPDPDTWHDWEEEEVASLPLSQ
RLTAPSAKRVAELKTPVACRKRNKGPLVPITPMPGFSDMDTPELKNRLNRFGVRPLPKKQ
MVLKLKEIHQYTHQLQSSESEEETSGPQRPPNASNSQSAPLSFKQPTAPPAVSPVKLQPS
EEDELLSASQNSDTSSTAESDRSNPELCVSEDDDSDTEGITASQAVVCEKDKLLAVRQFI
LSDPKLYARVLQYQPLSLAELRSSLKAAGIRLGAAKLLDFLDSQCITFSTAKQGQNASSR
RKRRVKTTTSGGAAGRGRKKAAKPNGGVACGLK
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggaccaagacttcaccgacctctgctctcgtctgctcaaaagagtgaag
aagaaaggagcaggaggatctggagatgaaaagagaccaaccaccagggatgagcagcca
tcctccccctcctctagaagaaacccccctaagaggaggaagaagactgatagggatgtt
accaagactgaaataaagcgtgcgatcaatggcaggactcagtctgcagggtctggtgat
gtgtctcagcccgatcctgaagaatctggcacagggagagccaaagatgcagtgatccgg
agaatgcagcggtttaagagagccagtccagagagactcctgcatgcagagactgagcga
cccacaagcacagagtctgatggaaaccatctccccactgctgggacccagctcacagaa
gatgtgagcagtgacgaggccctggctctccagctccagcaggcgttggatcgtgaggct
cagtcctccagagacgtggaagatgaaggattgttcttctgccagctctgtcagaaagat
ctgtcagccatgagccctccgctgcgcactcagcacatcaacagatgtttagatgcaagc
gagagcagcgctccttcagcatcccatcagtcccaccccagaccacgggtcccagagtgt
cccatttgtggaaagagttttaaatcagaaaaaagccggtctgtccacctaaagcgttgc
tcgactgatatgggtgtgaaacctaatgatcttctccaggctctgaggagacaggctgct
gagacagcgtgcgactacaccaccgaccaatcacagcaactaggtagtggtacgataact
aggagggatggcatgcctgtaaaaaagaggaccaggaggaaagcccagaagttggacgag
gacacaatggtggcgctggctctgtcccgctctttactcgagcaggaaatggaagaggag
agggagatactggctcctgtcttacagtggaaacctggagcaggcaagggccgtgggaag
agaaggaagggagcgtctcctgtccacccaccacttctcctcatcctggacgctcagaca
gcactgaaccgtctgcaggagcgtgtttcgtcactcctgctccgttccagacccccctct
ccgccaacacccactctttccccctccgcgctccctcttcatcctcaagcccccctctgg
gtcaaaagtgctcttcatggaggaggaccagatgcagtttcagagttttacacctcagaa
ctaagcaacttcatacagccatgcgttgcaccggagagagaaaaggtcacgtctcttgaa
gtaactccagtcaagaaatttccagatgaggttgattcagtccaggaaaagctttcggat
ccgagcccagctcaacaccagactacccgtcctctcaccccctgttcgggtacaccaggc
tcccaggctctgcaggacctgatggagcttgcagaggaaggcatgaccctcacccagtat
ggatacacaacacattacaagtcagttaaagacaatgcagtgaatgaacttccctcaagt
ggttttgttccagagacaaatgacaagacgacggccaaggaaacctcagtgtacgtttca
aagctagcatcagatctgagcagcatggtgaacaaccctcaactcagtgatgtgcagtta
caggtggacagtggggacgttttcttcacgcactcgtttatgctgtacacacgatgcccc
ctgctggccaacatggttcatgactcaggttttggtgttcaggaggagggtatgcctgtc
tctcagagggtgttgttgggtaatgtgcttggggaggcagtactggccctcctgcagtat
ctttacacagcccactgtcctctgacacacacactgctaccccacatacaggagcttgcc
gataggttttgtttggctgagctgcagcagcagtgtgaggaatattctggaggtgtgggg
gaaaacacaagagaggaatctgaaggcatttttccagcaccccagcctcatctcggggac
caggaagaccagaacttggcagaaaaaaatttcttggagctcctccaatcaatgtggcag
cacgaggacagtgaagaagaggatgattttaaagagactgccggagaggaaagagacctg
gaagaggagcaagagaaagaagatggagaaaaagaggaccgggtggatgaggaagagctt
gacgagatctatgagtttgcagcgacacaaaggaagatagagacgatgttggaggctacg
accgagaccgaagaagaggagggagatgcaaatacatccctcagaaatgagaagaaggat
gagacagaagacaggaacgagacagaatccctctcagagaaatctgccggcagttgccat
agtaacaaacaaggcgtggatgggatggaggctgccatggtaacaagtccaatggaagaa
acccttaaaaaccccaattcagagaccgagagagtttgcttgattcaagaattagatgaa
aacagagactcggatgccagtctagataacagctatgactgtttattctcccagtctgta
ggggaatacatggaaccatcacagacgccagcatcctgctctcagcaacaacgttacaag
ccatcgcacacagtacagcaaaacacacccgccccgtttcacccttcatgtgttagtgag
gtgatcgacctgtctataagccctccaccaagctcagatgtgtcagatgagactaacttc
cccttacctggattgtctcctgttcctcatgagggtgaacatacagataaatctccacta
actaaagacaattcagtatgccaggaaatcaagaaccccgcttcccctccagaatctcaa
agtaaacgggttgagctcattgttctctcagattcatgtaaacaaatgcatcaatactgc
tacctaaatgctcctactactaaatgtgctttgactcctcggtctcctttcgaatctccc
tcagaacctcttcagacgtccacaagctatgtttgcaaagtcaccgagaacagtttcaaa
gaatctggatcccaagcccatgccggcaaacgggtagatgcttccaagcaggtgtcgact
gatacagaagccagatctgaccgatcagagcactgtagccctgggattgcgaatgaaagc
gtgtttgatggctctgctgaggtttcctggctgattccagccactccggtaccatccaca
cgctgtagctcttcccagacctgcatcagcatgcgccgaacccagctcttccccaaatca
tcgtcctcttcttcctcttcctctgtctcgggtggttttaaacctgctagctttgattct
tcaagcagcagctgcataaaagagaagccggtacctttgtctgaattgcccaaatcagat
ctgagtccctttaaagaatgtcatagcactgatacagatcgctctccaggttatcagaga
ccgcttcaccatctaagactgtctcaggttccttctacagatgtttctgatggctcccac
attggcagcatcatgggacatccaacccagggtgtctccaagccctccagtagcactcct
ctccattcagactcttccttacaacgtcagatcctgtttggctcccctgtggttgatgac
tgtgatgttcggctcagggatagtagaggtaattctagattcttcagtagtcagggaaaa
attggcttagtgtctctgcagctgagttcttcttcccctagtaagacacctgagaagaag
cagggtagctctcttgagcagggatgctccagtccgtccccgaactctcaaagctacagt
catccagaaagatggaaaaagagagagaacgatggggtagagcgaatggaattgggagag
aatccaaatcaaagtaatgaagaattggtggatgttgcgggaaactcattcagtgatatg
gatgggtcaggaagatcgggagaagagaatccgaatcaaagtgttgacgaagtggtggat
attgcgagaaactcatttagtgacatggatgagcctggaagaagagcgggagaagagaat
ccaaatcaaagtgttgacgaagtggtggatattgcgggaaactcattcaacgatatggat
gggtctggaaaagtgggagaagagaaaccaaatcaaagtgtcgacgaagtggtggacgtt
gcaggagactcattttgtggcatggacgagcctcctatagcgtttgatgactcctggggt
ttggatggaggagttggaaaccagaagccctgctttagtctacggcttgacagcagtgga
ggtacagtcagtccaccgggtctcgaaggtaagggaccaatgtccaggtctcatcttgat
tctggagcttgtaccaaaactccggatccaagtccaggtccatttaatcacagtctgcct
gatcctgacacgtggcatgattgggaagaagaggaggtggcttcccttcctctttctcag
agattgacagctccctctgccaagagagttgccgaactaaagactccagttgcttgcaga
aagaggaataaaggaccgctggtgcccatcactcccatgccaggcttttccgatatggac
acaccagagctcaaaaacagactcaacaggttcggcgtgcgtccgctgcccaagaagcag
atggttctgaagctgaaagagatccatcaatacacccaccagctgcagagctccgagtca
gaggaggagacctctggaccccaacgcccaccgaatgcctctaactcccagtctgctcca
ctctcctttaagcagcctacagcaccccctgctgtctcacctgtgaaactgcagccaagt
gaagaagatgagcttttatcagcctctcaaaactcagatacatcctccactgcagagtct
gacaggtcgaacccagagctgtgtgtgtcagaagacgacgactcggacactgagggcatc
acggcatctcaggctgttgtgtgtgagaaggacaaactccttgcagttcgtcagttcatc
ctatccgaccccaagctgtacgcacgagtgctgcagtaccagcctctctccctggcggag
ctgcggtccagcttgaaagcagcgggcatcaggttaggtgctgctaaactactagacttc
ctggactctcagtgcattactttcagtacggccaaacagggccagaatgcatcttcccgc
aggaaacgacgtgtgaaaaccacaaccagtggtggtgcagccggaagaggaaggaaaaaa
gcagctaagcccaatggaggagttgcatgtgggctgaaataa
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integrated database retrieval system
