Cyprinus carpio (common carp): 109089299
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Entry
109089299 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03030
DNA replication
ccar03410
Base excision repair
ccar03420
Nucleotide excision repair
ccar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109089299
03410 Base excision repair
109089299
03420 Nucleotide excision repair
109089299
03430 Mismatch repair
109089299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccar03032
]
109089299
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109089299
DNA replication proteins [BR:
ccar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109089299
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109089299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
RuvB_N
AAA_16
AAA_14
AAA_17
RNA_helicase
nSTAND3
AAA_18
NTPase_1
AAA_19
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
109089299
NCBI-ProteinID:
XP_042572136
UniProt:
A0A9Q9ZT88
LinkDB
All DBs
Position
B1:complement(2265200..2278817)
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDGEQKKKQKSKTKVTSPTSDEKPSGKRKKRVIIDSD
SEEEKKKEKKTKKGTKETDAATVKKHPVTYVSDSDSDDTFMTLKKTKPKENGTAKGKKES
DSGKAKQVKVSSSKSPNTISKGGVKSSQPTVSPKIGPTPTKQTPTSVMAFFGSSSVQRSD
KKMVASTSTKRKAPTQETEELLSDEAIAKELQMDEDMELEKQIHDDEEFARTLAKLDEAP
LPKKARVDSVSPSKSSSHAISSDTKPKKDPSPKKSPVKTSSKLAQMKRRQEEVEEQREKD
RGEKQIKISPKKEPISPTSSERAATPKTSVSTGMTKSRNFSTPKSDSAPNKISPTKPENT
SPEDLEKKRANSSAFRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDEAK
SLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESFGTKVINEDELLDLIRTKPGKKS
KYEIAAEAENKSSKTRTPDSRGKPTPPSKKATPQGPSPNKRSPSKGKSKPGSASKSGTLG
ASRSEVKKSLSFDQSKGASPVSHSTPESEGSSLLWVDKYRPRSLKNLIGQQGDQSCANKL
LRWLQNWHKHHSGNTKAPSKFGKVGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYS
YVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGASQTVSSKHVLIMDEVDGMAGNEDRG
GIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAVMSIAFKEG
LKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVC
RKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTA
DSICDGDLVDKQIRSRQAWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKH
SRIIQELASHMSLKTLSSKEAINLDYLPYFRSAILEPLQSQGSEGASQSVKLMDDYDIIK
EDVDNIMEISMWGGQPDPXFSEHIVEFSSMCVFVKAAFTRAYNKESHLMPYSLQVVKKSR
KGAIDPELIGELDSESQFQEEEEGDGVTADAMIKQKKSKPAKDVKQEKPGASGKGKGRGK
GKAMK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaggttttttgcatccaccaaacctgcggcccccaaaccttccaacgga
agcaccagcactgatggagagcagaagaagaaacaaaaatcaaagactaaggtcacaagt
cccacatctgatgagaaaccatctggaaagcgaaagaaaagagtcataattgattcagac
tctgaggaagagaagaagaaggagaagaagaccaagaagggcactaaagagactgatgcc
gccacagtcaagaaacacccagtaacttatgtgtctgattctgattcggatgatacgttt
atgactctgaaaaagacgaaaccaaaagaaaacggaacagctaaaggcaagaaagaatca
gattcaggaaaagcaaaacaggtgaaagtctcatccagtaaatccccgaacacgatctca
aagggaggggtgaagagctctcagcctaccgtctccccaaagatcggtccaacgccaaca
aaacaaacacctacttcagtaatggccttctttggcagctcaagtgttcagaggtcagac
aagaaaatggtggccagtaccagcactaagaggaaggcacccacacaggaaactgaggag
ctgctcagtgatgaagccattgcaaaagaacttcagatggatgaagacatggagttggaa
aagcagatccatgatgatgaggaatttgcaagaacattagccaaactggatgaagctccc
ttaccgaaaaaggctcgggtggactctgtctccccctccaagagcagctctcatgcaatt
tcctcagacaccaaacccaaaaaggacccgtcccctaaaaagagtcctgtgaagaccagc
tccaaactggctcagatgaaacgacgacaggaagaagtggaagagcaaagggaaaaagac
aggggtgaaaagcagattaagatttctcctaagaaagagccaatctcaccaactagctca
gagcgggcagctacgcccaaaactagtgtttccacgggaatgacaaaatccaggaatttt
tccacgcctaaaagtgacagtgcacccaataaaatctcaccaacaaaaccagagaataca
agtcctgaggatctagagaaaaaacgggcaaattcatcagccttccgtaactatttgaac
cgagaaggaccacgagcactggggtctaaagagataccacagggagcagagaactgcctg
gagggttgtgtgtttgtgttgaccggtgtgttagaatctatggagagggatgaagctaag
tctctaatagagcgatatggcgggaaagtcacaggaaacgtcagccgtaaaactacttac
cttgttctgggacgagacagtggagcctcaaagactgagaaggcggagagttttggaact
aaggtcattaatgaagatgagttgttggacctcattagaaccaaaccaggcaagaagtct
aaatatgagattgcagcagaggcagagaataaatcctctaaaacaaggactccagactct
agaggcaaacccactcctccatccaagaaggccacaccacaagggcccagccccaacaag
agaagcccttcaaaggggaagtctaagcctggctctgcttctaaatctggaacacttggg
gcctctcgttcagaggtcaaaaagagtttgagctttgatcaatccaagggagcatcccct
gtatcccactctacccctgagagtgagggtagcagcctgttgtgggtggataagtaccgc
ccccgtagtctgaagaacctgattgggcagcagggggatcagagttgtgctaacaagctt
ctgcgttggttacagaactggcataaacatcacagcggcaatacaaaagcaccatccaaa
tttggaaaggttggaagtaaagatgacggttcaggatttaaggctgcattgttatctggg
cctcctggtgttgggaagaccactactgctgctctcgtctgtgaggagttgggttacagc
tacgtggagatgaatgcaagctgcacccgcagtaagaacagcttaaaggaagtgatcgca
gaatcactcaacaacaccagcattaagaacttctattccggtgcatctcagacagtgagc
agtaaacatgtcctcataatggatgaggtggacgggatggcaggaaatgaagacagagga
ggaatacaggaaatgattggtttgataaaacagtcaaagattcccattatctgcatgtgt
aatgaccgcaatcatcagaagatccgctcgctggctaactactgctacgacctgcggttt
cagagaccccgtgttgagcagatcaagggggctgtgatgtctatagctttcaaagagggt
ctgaagatcccacccccagcacttaatgaagtcattctggcatccaatcaggatattcgg
caggtactgcataatctgagcatgtggtctgctaaagacaaagtcatgacctatgaccag
gccaaagctgatgccaacaatgctaagaaggacatgaaactgggtccatttgatgtgtgt
cggaaggtgtttgcttcaggagaggaaaccgcccacatgtctttgattgacaaatcagac
cttttcttccatgattactctttagcaccactatttgttcaagaaaactacctgcatgtc
cgaccagctgctgcagggggaaatctgaagaatcatttggtgttgttgagtaaaacagca
gacagtatttgcgatggagatttagtggacaaacagatccgctccagacaggcatggtct
ctgcttcccacacaggcgatttatgcgagcgtgttgccgggggagctgatgcggggttat
atgagtcagtttccgacctttccaagctggttgggcaagttttcatcaactggcaaacac
agccgcatcatacaagagcttgcctcacacatgagcctaaaaacgttaagtagtaaggaa
gccataaatctggattacttgccgtattttcgctcggcaatattagagcctcttcagtcg
caaggttcagagggagccagtcagagtgtgaagctcatggatgattacgacatcatcaaa
gaggatgttgataacataatggagatcagcatgtggggtggacagccggatccttgattt
tctgagcatattgtagagttctcctccatgtgtgtgtttgtgaaagctgcatttacaaga
gcctacaataaggaatcccatcttatgccttactccttacaagtggtgaagaaaagccgt
aaaggtgctattgaccctgagcttataggagagcttgacagtgaatctcagttccaggaa
gaggaagaaggtgatggggttacagcagatgcaatgatcaagcagaagaaatctaaacca
gcaaaagacgtcaagcaagagaaaccaggggcttctgggaaggggaaaggcaggggtaaa
ggaaaggccatgaagtga
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