Cyprinus carpio (common carp): 109090009
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Entry
109090009 CDS
T05134
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109090009
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
109090009
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
UBA_N4BP1_C
zf-CCCH_4
TNFR_ELAPOR1_6th
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
109090009
NCBI-ProteinID:
XP_042609899
UniProt:
A0A9Q9XXP5
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All DBs
Position
A5:13401041..13415687
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AA seq
1020 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVSCSTAESSCESPNAGSSIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHRGCREPQPLPASAGHDSPEEEEEEDEEAGEDGSSSESDGEARLRSG
SSGGAVSAAGSGEGVTGRKQDLLIATKPHRQLCRSSCLDRPSFSQSSTFQELRADDTRSD
SSQRALALPASSAQMPLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGSSALINDVLA
ELVRLGNKGDPENQAAVGTAGLMPRAMGAKEAISPEASLEEDPSDTYDNLRPIVIDGSNV
AMSHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKE
KILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLL
MYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKY
YHPERANQSQRAVADELRAFAKLSAVKTMSEGALAKCGTSGSAAKGDSSSEAKRVAPKRQ
SDPSIRSVACEQEERLCPARKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVP
GSLHFTHSSLEHAGSIQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTMS
LQDSFCSLEQPEPVGVGGGYPGRASMCPEPGRSHSSDSFSSYSGEMYLNSLEGSLDDSMK
GPPSQSQTQPSVQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLAPHSQHPVV
GARSSCPGDYPPLSQNMLPSASPSQQSRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQ
HASWDPLPCGNEPYSYGSYGLTGGLMPCCERVMVRSMPEKMEQIWRSPWDSVPPPPPSAR
GPVEEPQERHPIPEHQYQTYRNLCNIFPAFVVHLVMEENPHMTDPQQLAAVIVTKLRSCH
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtcagagtgagctgcagcaccgccgagtccagctgcgaa
agccccaacgccggctccagtatcatcgtaaacatcgaggacggcaaggaagaagattgc
actaaagctaaagagtacattgtgtcactgattagtcctgtgcataagcaccgtgagcgt
ttgactctttggctgcagcggcgactgcatgccctacgcgcagctattgagtacgagagc
tgtgccgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcgcaggta
acagctgcatgcgctatgctgcagcgcctgaagatggagcatcgtggctgccgcgaaccc
cagcccttgcccgcttccgccggccatgactctccagaagaagaagaggaggaggatgaa
gaagctggggaagacggcagtagttctgagagtgacggcgaagcacggttgcggagcggg
agttctggtggagctgtcagcgcagcggggtcaggagaaggagtgaccggaaggaagcag
gacctgctcatagcaaccaaacctcaccggcagctatgccgctcatcctgtttggaccgt
cccagcttcagtcagagcagcacctttcaggagttacgtgcagatgacacccgctctgac
tcctcccagagagccctcgctctgcctgcctcctcagcccaaatgcccttgcgtcaaacc
agcgatcgagattaccaaaccaaaatggactttgctctgaaactgggctactccggagag
caggtggagtctgttttgagtaaactggggtccagtgcactaatcaatgatgtattggcc
gagctggtgcggctagggaataaaggagatccagagaaccaggctgcagtgggcactgct
ggtttaatgccacgggcgatgggagccaaagaagccataagccctgaggcatcactggag
gaagacccatcagacacatatgacaacctccgaccaatcgtgattgatggatccaatgtt
gccatgagccatggaaacaaagaggtgttctcatgcctgggcattcaactggctgttgat
tggttcctagagaagggccacaaagacatcacagttttcgtcccagcatggaggaaagaa
cagtcaagacctgatgcaccaatcaaagatcaggagatcctacggaaattagagaaggaa
aagatccttgtcttcacaccgtctcgcagagtccaaggccggcgagtggtttgctacgat
gaccgttttatcgtcaagctagcctgtgactcagatgggatcattgtgtccaacgataac
taccgagacttgcagaatgagaaaccggagtggaagaaatttattgaggaacgactcctc
atgtacagcttcgtcaacgacaagttcatgcctcctgatgatcctttagggagacacgga
cccagtctggaaaattttctccgtaaacgaccagtggttccagagcacaagaagcagccg
tgtccttatggtcagtacagcaaaagtaagaagtgcacgtacggccataagtgcaagtac
taccacccagaaagagccaaccaatcacaacgggctgtcgcagatgagctcagagccttt
gccaaactttctgctgtaaagacaatgagcgagggggcacttgccaaatgtgggacctct
ggttctgctgccaagggagacagtagctcagaggcaaagcgagtggcacccaagcgccag
tctgaccccagtatccggtcagttgcatgtgagcaagaagagagactctgtccagcgcgg
aaggctgaggccagttctgtaccgtctttagtttcagcgcttagcgttccaactatgcca
ctgacgaaaagtcacgcagcaggcgctctgaacacacgctcagcgagcagccctgttcca
gggtctctgcactttacccacagctcgcttgaacatgcaggcagcatccagtatcccccc
atcctagtcaccaatagccagggagcctctgtggcttacggtgagccgttccccaagtat
gactctgtggtaagcgaccatggctactattccatgctcagtgacttctccaccatgagc
ctccaagacagtttctgcagtcttgaacagccagagcctgtaggggttggtggaggatat
cctggcagagccagcatgtgcccagaacctggccgaagccattcatcggactccttctca
tcctacagtggagagatgtacctcaactcattggagggcagcctggacgacagcatgaaa
gggccaccttcgcagtcccagacgcaaccttcggtgcaaacgcgccttcaagcctttgct
cacggtttccaccatgaggccttgacacgtgtacagagctacggaacggatgaacccaaa
ccgggtcctcgaaagcagtcctccgcccaccttgcgccacactcccaacacccagttgtt
ggcgctcgatccagctgcccaggagattaccctccactctcccagaacatgctgccttct
gccagcccctcacagcagagtcgatccttgggcatgactcgaatggacagcatctctgac
tcacggctctacgagagcaacccgctgcgccaaaggagacctcctctttgccgagagcag
catgccagctgggaccctttgccatgtggtaatgagccctacagttatggaagctacgga
ttaacaggaggccttatgccttgctgtgaaagggtgatggtccgcagcatgcccgagaag
atggagcagatctggaggtccccatgggatagcgtgccgcctccaccgcccagtgctcgt
gggccagtggaggaaccccaagagcggcaccctattccagaacaccagtatcaaacctac
cgaaacctctgtaacatcttcccggcatttgtggtccatttggtcatggaggagaaccct
cacatgaccgatccccagcagctggctgccgtcatcgtcactaaactgcgctcttgccac
taa
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