Cyprinus carpio (common carp): 109090026
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Entry
109090026 CDS
T05134
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109090026
03015 mRNA surveillance pathway
109090026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109090026
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109090026
5.6.2.5 RNA 5'-3' helicase
109090026
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109090026
mRNA cycle factors
Common to processing body (P body) and stress granule
109090026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109090026
NCBI-ProteinID:
XP_042575022
UniProt:
A0A9Q9W1C2
LinkDB
All DBs
Position
B2:30100138..30121137
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEFEFTDFTLPSQTQTQGHTQSQLDNQVNG
PDGVLPNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTATDRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggatctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaactcagggccatacccagagtcaactcgacaaccaggtgaatgga
cctgatggtgttctgcccaacggagacgatgcagtggtgaagaccagccagcttctggcc
gagctgaactttgaggaggacgaggaagatacttactacactaaagatcttccggtgcac
gcctgcagctactgtggcatccacgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcacaaggacggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggctaaagcc
gactctgttgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaactgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccgacagcgacactggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctgcgatacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcggtataagggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccgcataacttccaggtggactttgtctggaagtcgacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtccggatat
atctatcacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaacggtccggtgctggtttgt
gctccgagtaacatcgcagtggaccagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattcccccgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgacgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagttccgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccgtcaaacatcttctacgagggctct
ctgcaaaacggggtcaccgccaccgatcgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaggcgtctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacccgaccagatcggcatcattacgccctacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctccctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccacgacgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaa
ggaccgctgaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtacgacgcacgagaggcc
atgattcctggatctgtgtatgatcgcagcagcaccgggcgtccatctaatatgtacttc
cagacccatgaccaggtcggcatgatcgggactgggccgaacccaatgggctccatgaac
atccccatcccattcaatctggtcatgcctcccatgcctccgcctgggtacctgggccag
gtgaacggacctgctgccggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcactggtaatcacggcagtgggcaggccaacatgccgaacagc
caggccagtcaggacctggtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagccggagctctca
caggatagctacctgggtgatgagttcaagtcccagatggacgtggcgctttcccaggat
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
