Cyprinus carpio (common carp): 109090216
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Entry
109090216 CDS
T05134
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109090216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109090216
03041 Spliceosome [BR:
ccar03041
]
109090216
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109090216
Spliceosome [BR:
ccar03041
]
Complex B
Other components
Prp19-related factors
109090216
Complex C
109090216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
NRDE-2
ARM_TT21_C
ARM_TT21
TPR_1
Tcf25
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
109090216
NCBI-ProteinID:
XP_042575168
Ensembl:
ENSCCRG00000009891
ENSCCRG00000036659
UniProt:
A0A8C2ESN5
LinkDB
All DBs
Position
A3:complement(13531305..13537928)
Genome browser
AA seq
848 aa
AA seq
DB search
MSTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFAHNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPMKATGKPHTLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATINATGTVSDLAPGQSGVDDMKMLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDAEDGEPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgcttagcggaaaggcagacgttttatttgaagatgatgatttgccttatgaa
gaagaaattatcaggaatccgtattcagtcaaatgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagcattaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaag
tgtgtcacagatccagcatacgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtatctcaatgcaaa
attacacggagccgacggacgttcgatagggcgttaagagcgctgcccattacccagcat
cctcgcatctggcccctgtatcttcgctttgctcataacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagctgtctcctgagaatgcagaggaatacattgat
taccttcgttcagttggacgcctggatgaagctgcgatccggctggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaacgtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcagtttgaggagagc
atgatcgcagccaagatggagaccacgtctgagctgggacaagatgaagatggtgacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacggccacttttactg
aacagcgtgctgctgcgtcagaaccctcacaatgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcgacagattatcaacacgtacacagaagctgtgcaaacgata
gatcctatgaaggccacgggaaaacctcacactctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcaattccagccaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtttataagtccttgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggattgccactcctcagatcatcattaactatgcc
atgttccttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctctttaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatc
gaccgttacggaggcaagaagctggagagagcacgcgatctgtttgagcaagcgctggat
aggtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tacggcctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaacaacatcagatgttcaacatctacatcaaacgggcagccgagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcctgcgctttgcggacatggaaagcaaacttggagagattgacagagcaaga
gctatctactcctactgctcacagatctgtgatccaaggttgaccgctcatttctggcaa
acatggaaggagtttgagatacgccatggtaatgaggacaccatccgcgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccatcaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagatgctggagcagaaggctcaacagctcgctgcagaggctgagcag
gacaaacccaaacctaaagataagatcctcttcgtcaggagtgacacctctcgcagtgaa
cttgctgaactggccaaacaagctaacccagatgagattgacattgatgatgaagatgag
gatgcagaggatggggaaccagatgaggtgcagttggagcagaagtctgtccctactgct
gtcttcggaggactaaaggatgactaa
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