KEGG   Cyprinus carpio (common carp): 109090410
Entry
109090410         CDS       T05134                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03010  Ribosome
ccar04120  Ubiquitin mediated proteolysis
ccar04137  Mitophagy - animal
ccar04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    109090410
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109090410
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    109090410
   04137 Mitophagy - animal
    109090410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:ccar03011]
    109090410
   04121 Ubiquitin system [BR:ccar04121]
    109090410
Ribosome [BR:ccar03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    109090410
  Archaea
    109090410
Ubiquitin system [BR:ccar04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   109090410
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Ubiquitin_5 TBK1_ULD zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 109090410
NCBI-ProteinID: XP_042575024
Ensembl: ENSCCRG00000007704
UniProt: A0A8C1S9X0
LinkDB
Position
B2:complement(30156244..30159717)
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCEKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaaaactctgaccggtaagaccatcaccctcgaggtcgagcccagc
gacaccatcgagaatgtgaaggccaagatccaggacaaggaggggatcccgcctgaccag
cagcgtctgattttcgctggcaagcagctggaagacggtcgcacgctttcagactacaac
attcagaaagagtccaccctgcacctggtgctgcgtctcagaggaggcatcatcgagccg
tccctcagacagctggcccagaaatacaactgcgagaagatgatctgccgcaagtgttac
gcccgtctgcacccacgtgccgtcaactgccgcaagaagaagtgcggccacaccaacaac
ctgcgtcccaagaagaagctgaagtag

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