Cyprinus carpio (common carp): 109090628
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Entry
109090628 CDS
T05134
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109090628 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109090628 (prpf4)
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109090628 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_Aladin
WDR90_beta-prop_4th
PRP4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
109090628
NCBI-ProteinID:
XP_042580904
Ensembl:
ENSCCRG00000030929
UniProt:
A0A8C1SAW7
LinkDB
All DBs
Position
B5:complement(23356855..23362857)
Genome browser
AA seq
507 aa
AA seq
DB search
MSDEDEVPVVKKARIFYGSLEEKEKLRLSREGISSTAKDAVKAGIEAGHINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDIEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKEDEKAKRTQDEYQQTWYHEGPSSLKEARIWLAKYSLPRAVERLDA
ARAQKEIPESTRTVKQQELHKTLRNVNNFCSQIGDDRPISHCQFSPNSELLVTASWSGLC
KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFARVWDLRTGRCIMFLEGHHQEIYSINFSPNGFHVATGSGDNTCRVWD
LRHRRCMYTIPAHENLVSSVKFQPNDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPNGQLIATCSYDRTFKLWMAE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagttccagttgtgaaaaaggccaggatcttctatggaagcctt
gaagaaaaggagaaactgcgtctcagccgtgaaggaatatctagcactgccaaagatgct
gttaaagctggcattgaggctggacatattaatatctccagtggtgagtctatggagatg
gaggagcgtgtgagtgagcgacaggctgaagtgctggcagagtttgagcgtagaaagcga
gcgagacaaatcacggtctccactgatgatatagaggtcaaggcctgcctccgagctctc
ggcgagccaatcacgctgtttggggaggggcctgcagagagacgagagagattgaggaac
attctttcagtagttggtcctgatgccttgaagaaatcaaagaaagaggatgaaaaagca
aaacggactcaagatgagtatcagcagacatggtaccatgaaggaccgtcatctctaaaa
gaggcacgtatttggttagccaagtattccctacccagagcagtggaaaggttagatgct
gcaagagcacaaaaagagattccagagtctacaagaacagttaaacagcaagagcttcac
aagaccctacggaatgtgaataacttctgcagccaaattggtgatgaccgtccaatatct
cactgccagtttagtcccaactctgaattgcttgtgaccgcatcatggagtgggttgtgt
aaattgtggaaagttccagattgtacacttatacgcacattaagaggtcacaataccaac
gtgggagcgattagctttcaccctcaagccacactcacactcgaggagtcggatgtcaat
atggcttcctgtgctgcggatggatctgttaagctgtggagtttagacagtgatgagcct
gtagcagacattgaggggcactctatgagggtggctcgggtggcctggcatccttctggg
cggttccttggaacgacttgctatgataactcatggcgactttgggatcttgaagcccaa
gaagaaattctgcatcaggagggtcatagtaaaggtgtccatgacctgcactttcaccca
gatggctctctggcaggaactggtggtttggatgcatttgctcgtgtctgggacctgcgg
actggtcgttgtatcatgttcctggaaggccaccaccaagagatttatagcatcaatttc
tcaccaaacggctttcacgtggcaacaggaagtggagataacacctgtagagtgtgggac
cttcgtcatagaaggtgtatgtacaccattcctgcccatgagaaccttgtgtcttcagtc
aagttccaacctaacgatgggcattttttgctgactggtgcatatgacaacacagccaaa
gtgtggacccatcctggctggtcacctctgaagactctggcaggtcatgaagggaaggtc
atgggtcttgacctttcacccaatggacagctcattgccacctgctcttatgaccgaacc
ttcaaactctggatggcggaatga
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