KEGG   Cyprinus carpio (common carp): 109090717
Entry
109090717         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
  KO
K06100  symplekin
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03015  mRNA surveillance pathway
ccar04530  Tight junction
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109090717
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    109090717
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109090717
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109090717
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     109090717
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     109090717
    U7-dependent histone pre-mRNA processing factors
     109090717
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 GNC1_N V-ATPase_H_C Adaptin_N Cohesin_HEAT Rep_Org_C
Other DBs
NCBI-GeneID: 109090717
NCBI-ProteinID: XP_018960095
Ensembl: ENSCCRG00000015311
UniProt: A0A9Q9VBN6
LinkDB
Position
A5:complement(30252615..30269343)
AA seq 1236 aa
MMASGVGEQAHGSVASQFYSNEEETAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQEL
IINKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDE
SVNVVKKAILTLTQLYKVALQWLVRIKSVSDMQEACWDMMTQIKEDVLALLDSDNDGVRT
HAIKFTESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKSALEQLLK
FMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNL
KLHLVSVLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIK
MDAPLAEDDEDKEEPAPVVTPKPSSSVGTQSAIDLTAEFLLPLLTPDNVANLVLISMVYL
PEVMPASFQATYTPVESAGTDAQIKHLARLMATQMTGAGLGPGLELCKARDEEVKEEDGG
AGESSSKDPLIIRKLSAVSLGQAISVVGAPAAYKSPITEEAPQIKKLPEPILPTSQPKAP
GASGRKKVFKLADVVQPFSEAQIEKLSNMAIKRILLSEKVIAQSGMSHVRVKLLARLVTQ
FEGGKKNDLLQFILEDMRGRSELAFSLLYHEYNEYLSQQPSGSLDSYEHCLYTLLSGLQE
KPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQYQYLN
VLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGED
TEVASLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMSSPDLLLLV
ENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQ
ALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSSKCDMKSIIKA
TNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILARLIL
KQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPLLQHVHSFTPH
QQAHIPASIMAVLEANSRKPEPEPQPELHHPEIIEEREVPVPKIISLTGIVXREDPAATP
VEFTEPPPAQQQQIPRREEVEEPMEQEEADHAALEVMSEDASQQVEVTEEASQSNSISEK
TDEPMEESAARPVDVADQPKEESEDVLPEAGESSVD
NT seq 3711 nt   +upstreamnt  +downstreamnt
atgatggcgtcaggtgtgggagaacaagcacatggtagcgtggcctcccagttctacagc
aatgaggaagaaacagcctttgacatgaccactagcgagaaggtggtggaactgctaaac
caggcggccctcatctctacagaggaaaagctcattgttctcaaacaggtgcaggagttg
attatcaacaaggacccttcattgcttgataattttctggatgaaatcatcgcatttcag
actgataaatcaattgaggtgcgaaagtttgtcatcggattcattgaggaggcttgtaaa
agagacaatgagctgcttctgaggctgattgccaacctgaacatgctgatgagagatgag
agtgtgaatgtggtgaagaaggccattctgacactcactcagctatacaaagtggcttta
cagtggctggtgcgcattaagagtgtctcggacatgcaggaggcatgctgggatatgatg
acccagataaaagaggatgttctggccttgctggattccgataacgatggggttcgcact
catgccatcaaattcacagagtccctcatcatcactctgtcaccacgtacacctgactct
gacacgcccaagaaacaggagggagacatcagcctggacaaaatccccaaagaccacaca
tatattcgatatgacaccttatgtgaggagggcaagtcggctctggagcagttgttgaag
tttatggtgcaccctgccatctccagcattaatctcaccactgcgctgggatcactggcc
acgctggccagacagcggcccatgttcatgtctgaggtggtgcaggcctatgagacgcta
catgctaacctgcccccgactctggctaagtctcaagtgagcagtgtgcgcaagaacctg
aagctgcacttggtctcggtgctgaagcaccccagcagcgtggacttccagggccagatt
tccactctgctgctggacctcggcatgtctcagagtgagatcacccgctgcacgccagcc
accgtacagccccgtaagagactccaccatgagccctacgtcgagggcaagaggatcaag
atggatgcccctctagcggaggatgatgaggataaagaagaaccagctccagtcgtcacc
ccaaaaccgtcctcctctgttggcacccagtcagccatcgatctcactgctgagttcctg
ttgcctctactgaccccagacaatgtggccaacctggtgctcatcagtatggtttacctg
cctgaagtgatgccggcctctttccaagccacctacacacctgtagaatcagccggcact
gatgcccagatcaaacatttagccaggctgatggccacacagatgactggggctggcctg
ggaccagggctggagctgtgtaaggctcgagatgaagaggtgaaggaggaagatggtgga
gcgggtgagtccagctccaaagaccctctcatcatccgcaagctgtctgctgtgtccctg
ggtcaagccatctcagtggtgggggcgccagcggcctacaagagccctatcactgaagag
gcacctcagatcaagaagcttccagagcccatactgcccacctcacagcccaaagctcct
ggggccagtggcagaaaaaaagtgtttaaattggccgacgtggtgcagccattttcagag
gctcagattgagaaactcagcaacatggccatcaagcgcatcctcctatcagaaaaggtc
attgcacagagtgggatgtctcatgtccgtgtgaagctgcttgcacggttggtgacccag
tttgagggtgggaagaaaaatgacttgttgcagtttatcttggaggatatgcggggcagg
agtgagctggccttttctctgctgtaccacgagtacaatgaatacctgagtcagcagccc
tccggctccctggacagctatgagcactgtctgtacacactgctgtccggcctgcaggag
aaacctgagcagagggatgggcttttcaccaagcttgtgttggaggctccagtcattacg
gactcagcactggaggtgattcagcgctactgtgaggatgagtctcgtgtttacctaggc
atgtccacattaaaggagctcatcctcaaacgcccatccagacagtaccagtacctcaac
gtccttctgaacctcagctctcatgaaaaagaaaaggtgcgctccactgccctcagcttc
atcaagcgcatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctcacc
tacatgcagtttctggtccacccaaacccaccttctcttctgtttggagcaggagaggat
acagaggtggcgtctctttacctctatctctccctccttccactcaaccatcgtctggtg
catgagctggctgctgtctacaccgaggccatcgccgacatcaaacgcagtgtgctcagg
gtcattgaacagcctataagaggaatgggaatgagctctcctgacctgctgctcctggtg
gagaactgccctaaaggagcagagacgctggtcactcgctgtctgcatatactcactgat
aaagtgccgccatctcctgagctggtggagagggtgagggatctttatcataagcgagtg
ccagatgttcgcttcctcattccagtcatcaatggcctggagaagaacgaggtgatccaa
gctctacccaaactcatcaaactcaatcctattgtggtgaaggaggtgttcaacagactg
ctgggcactcaacatagtgagggcagttcctccatgtctccgctcactcctggagagctc
ctcatcgccttacacaacattgactcttccaagtgtgacatgaagtcaatcatcaaagcc
actaacctgtgttttggggagaagaatgtgtacacgtccgaggtgctggccgtggtgatg
cagcagttgatggagcagacccctctccccatactgctgatgcgtacggtcatccagtcc
ctcactatgtaccctcgcctggctggtttcgtcatgaatattctagcccgactcatcctc
aaacaggtgtggaaatatcctaaagtgtgggagggctttgtaaagtgctgccagcgcacc
aaaccccagtcctacaacgttctcctccagctgcctccaccacaactggccagtgtgttt
gagcgctgcccggagatgagggagcccctcctacagcacgttcactccttcacccctcac
caacaagcccacattccagcatctataatggctgttctggaggccaacagcaggaagccg
gaaccagaaccacaacctgaacttcatcatccagaaataatagaagagagagaggtgcca
gtaccaaagattatttcattgactggtatagtatgaagagaagatcctgcagcgacaccg
gtcgagtttaccgaaccaccaccagcacaacaacagcagatccccaggagggaagaagta
gaagaacccatggagcaggaagaggcggaccatgctgctctggaggtcatgtctgaagac
gcatcacagcaggtggaggtgactgaggaggcatcacagtccaactccatttcagagaag
acagatgaacccatggaagagtcggctgcgaggcctgtggacgtggctgaccagcccaaa
gaggagtctgaggatgtgcttccagaagcaggagaaagcagcgtggactga

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