Entry |
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Name |
(RefSeq) LOW QUALITY PROTEIN: symplekin
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KO |
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Organism |
ccar Cyprinus carpio (common carp)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:ccar00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109090717
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109090717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ccar03021]
109090717
03019 Messenger RNA biogenesis [BR:ccar03019]
109090717
Transcription machinery [BR:ccar03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109090717
Messenger RNA biogenesis [BR:ccar03019]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109090717
U7-dependent histone pre-mRNA processing factors
109090717
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
A5:complement(30252615..30269343)
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AA seq |
1236 aa
MMASGVGEQAHGSVASQFYSNEEETAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQEL
IINKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDE
SVNVVKKAILTLTQLYKVALQWLVRIKSVSDMQEACWDMMTQIKEDVLALLDSDNDGVRT
HAIKFTESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKSALEQLLK
FMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNL
KLHLVSVLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIK
MDAPLAEDDEDKEEPAPVVTPKPSSSVGTQSAIDLTAEFLLPLLTPDNVANLVLISMVYL
PEVMPASFQATYTPVESAGTDAQIKHLARLMATQMTGAGLGPGLELCKARDEEVKEEDGG
AGESSSKDPLIIRKLSAVSLGQAISVVGAPAAYKSPITEEAPQIKKLPEPILPTSQPKAP
GASGRKKVFKLADVVQPFSEAQIEKLSNMAIKRILLSEKVIAQSGMSHVRVKLLARLVTQ
FEGGKKNDLLQFILEDMRGRSELAFSLLYHEYNEYLSQQPSGSLDSYEHCLYTLLSGLQE
KPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQYQYLN
VLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGED
TEVASLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMSSPDLLLLV
ENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQ
ALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSSKCDMKSIIKA
TNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILARLIL
KQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPLLQHVHSFTPH
QQAHIPASIMAVLEANSRKPEPEPQPELHHPEIIEEREVPVPKIISLTGIVXREDPAATP
VEFTEPPPAQQQQIPRREEVEEPMEQEEADHAALEVMSEDASQQVEVTEEASQSNSISEK
TDEPMEESAARPVDVADQPKEESEDVLPEAGESSVD |
NT seq |
3711 nt +upstreamnt +downstreamnt
atgatggcgtcaggtgtgggagaacaagcacatggtagcgtggcctcccagttctacagc
aatgaggaagaaacagcctttgacatgaccactagcgagaaggtggtggaactgctaaac
caggcggccctcatctctacagaggaaaagctcattgttctcaaacaggtgcaggagttg
attatcaacaaggacccttcattgcttgataattttctggatgaaatcatcgcatttcag
actgataaatcaattgaggtgcgaaagtttgtcatcggattcattgaggaggcttgtaaa
agagacaatgagctgcttctgaggctgattgccaacctgaacatgctgatgagagatgag
agtgtgaatgtggtgaagaaggccattctgacactcactcagctatacaaagtggcttta
cagtggctggtgcgcattaagagtgtctcggacatgcaggaggcatgctgggatatgatg
acccagataaaagaggatgttctggccttgctggattccgataacgatggggttcgcact
catgccatcaaattcacagagtccctcatcatcactctgtcaccacgtacacctgactct
gacacgcccaagaaacaggagggagacatcagcctggacaaaatccccaaagaccacaca
tatattcgatatgacaccttatgtgaggagggcaagtcggctctggagcagttgttgaag
tttatggtgcaccctgccatctccagcattaatctcaccactgcgctgggatcactggcc
acgctggccagacagcggcccatgttcatgtctgaggtggtgcaggcctatgagacgcta
catgctaacctgcccccgactctggctaagtctcaagtgagcagtgtgcgcaagaacctg
aagctgcacttggtctcggtgctgaagcaccccagcagcgtggacttccagggccagatt
tccactctgctgctggacctcggcatgtctcagagtgagatcacccgctgcacgccagcc
accgtacagccccgtaagagactccaccatgagccctacgtcgagggcaagaggatcaag
atggatgcccctctagcggaggatgatgaggataaagaagaaccagctccagtcgtcacc
ccaaaaccgtcctcctctgttggcacccagtcagccatcgatctcactgctgagttcctg
ttgcctctactgaccccagacaatgtggccaacctggtgctcatcagtatggtttacctg
cctgaagtgatgccggcctctttccaagccacctacacacctgtagaatcagccggcact
gatgcccagatcaaacatttagccaggctgatggccacacagatgactggggctggcctg
ggaccagggctggagctgtgtaaggctcgagatgaagaggtgaaggaggaagatggtgga
gcgggtgagtccagctccaaagaccctctcatcatccgcaagctgtctgctgtgtccctg
ggtcaagccatctcagtggtgggggcgccagcggcctacaagagccctatcactgaagag
gcacctcagatcaagaagcttccagagcccatactgcccacctcacagcccaaagctcct
ggggccagtggcagaaaaaaagtgtttaaattggccgacgtggtgcagccattttcagag
gctcagattgagaaactcagcaacatggccatcaagcgcatcctcctatcagaaaaggtc
attgcacagagtgggatgtctcatgtccgtgtgaagctgcttgcacggttggtgacccag
tttgagggtgggaagaaaaatgacttgttgcagtttatcttggaggatatgcggggcagg
agtgagctggccttttctctgctgtaccacgagtacaatgaatacctgagtcagcagccc
tccggctccctggacagctatgagcactgtctgtacacactgctgtccggcctgcaggag
aaacctgagcagagggatgggcttttcaccaagcttgtgttggaggctccagtcattacg
gactcagcactggaggtgattcagcgctactgtgaggatgagtctcgtgtttacctaggc
atgtccacattaaaggagctcatcctcaaacgcccatccagacagtaccagtacctcaac
gtccttctgaacctcagctctcatgaaaaagaaaaggtgcgctccactgccctcagcttc
atcaagcgcatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctcacc
tacatgcagtttctggtccacccaaacccaccttctcttctgtttggagcaggagaggat
acagaggtggcgtctctttacctctatctctccctccttccactcaaccatcgtctggtg
catgagctggctgctgtctacaccgaggccatcgccgacatcaaacgcagtgtgctcagg
gtcattgaacagcctataagaggaatgggaatgagctctcctgacctgctgctcctggtg
gagaactgccctaaaggagcagagacgctggtcactcgctgtctgcatatactcactgat
aaagtgccgccatctcctgagctggtggagagggtgagggatctttatcataagcgagtg
ccagatgttcgcttcctcattccagtcatcaatggcctggagaagaacgaggtgatccaa
gctctacccaaactcatcaaactcaatcctattgtggtgaaggaggtgttcaacagactg
ctgggcactcaacatagtgagggcagttcctccatgtctccgctcactcctggagagctc
ctcatcgccttacacaacattgactcttccaagtgtgacatgaagtcaatcatcaaagcc
actaacctgtgttttggggagaagaatgtgtacacgtccgaggtgctggccgtggtgatg
cagcagttgatggagcagacccctctccccatactgctgatgcgtacggtcatccagtcc
ctcactatgtaccctcgcctggctggtttcgtcatgaatattctagcccgactcatcctc
aaacaggtgtggaaatatcctaaagtgtgggagggctttgtaaagtgctgccagcgcacc
aaaccccagtcctacaacgttctcctccagctgcctccaccacaactggccagtgtgttt
gagcgctgcccggagatgagggagcccctcctacagcacgttcactccttcacccctcac
caacaagcccacattccagcatctataatggctgttctggaggccaacagcaggaagccg
gaaccagaaccacaacctgaacttcatcatccagaaataatagaagagagagaggtgcca
gtaccaaagattatttcattgactggtatagtatgaagagaagatcctgcagcgacaccg
gtcgagtttaccgaaccaccaccagcacaacaacagcagatccccaggagggaagaagta
gaagaacccatggagcaggaagaggcggaccatgctgctctggaggtcatgtctgaagac
gcatcacagcaggtggaggtgactgaggaggcatcacagtccaactccatttcagagaag
acagatgaacccatggaagagtcggctgcgaggcctgtggacgtggctgaccagcccaaa
gaggagtctgaggatgtgcttccagaagcaggagaaagcagcgtggactga |