Cyprinus carpio (common carp): 109091060
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Entry
109091060 CDS
T05134
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109091060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109091060
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109091060
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
GAPES2
Motif
Other DBs
NCBI-GeneID:
109091060
NCBI-ProteinID:
XP_042577912
UniProt:
A0A9Q9ZXR5
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Position
A1:complement(5343229..5354634)
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AA seq
555 aa
AA seq
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MSSEEADKPTAADASAGDEEEEWLYGDEGESKETEEEEAKLTAAISATSTPSVTEEVTPT
TDNTTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAYGGTPV
NLNIKSAGSRAYGAGSKVKGIDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNY
GFNEDTWKAYCEKQKRLRMGLDVHNIGSTTSKISVQQGRTGNSEYLMLVGVHVAKADFSS
PSNLYKAGLNPARISPPHWAGPASQEMSYYTKTPGTIDVIGRQTATISRVEGRRRHNLEG
NNIQVISEHTSSEAEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRIPITVP
PPNFPPPTGGPPPSLINLDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVNPWPGLMDNS
KQWDYYPRRDKEREKERERERPRERGHERDHSPSSVAYNSDEERFRSYRDYGDRGYERHR
ERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEP
SEERSADQENQEAME
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcggaggaggcggataaacccaccgccgctgatgcgagtgcgggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaagaggccaaa
ctgacagcagccatcagtgcgacttctactccttctgttaccgaggaggtcaccccgacc
accgacaacaccaccaccaccaccactactggaaatggtgtggccagtcaggaggaagca
cctggagaagatgaagacagtgagagcgatagcgatgatgacgatgatgatgtccgtgtc
accattggagatatcaaaacaggagcaccacagtacacggcatatgggggaactccagtg
aatctgaacataaagtcagcaggcagcagagcatatggagcaggtagcaaagtgaaaggc
atagacctcgaagctccaggcagcatcaatggagttccagtcttggaagtggacatggag
tcctttgaggagaaaccatggaggaagccaggtgcggacttgtctgactattttaactat
ggttttaatgaggacacgtggaaagcgtactgtgaaaagcagaagaggttacgcatgggc
ctcgacgttcacaacattggatccaccaccagcaagatctcagttcagcagggtcgcaca
ggtaacagtgagtatttgatgttagttggggttcatgtagctaaagcagacttttcctct
ccatctaacctgtataaagcaggtctcaacccagcgaggatatcccctccacattgggca
gggcctgcctctcaagaaatgtcctattatacaaagacacctgggaccatagatgtgatt
ggcagacagactgccaccattagcagggtggaaggacgacgtcgccacaatctggagggc
aataacatccaggtgatctcggaacataccagctctgaggctgaacctgccaagatgccg
cctcctttctttcccccaggaccactgcctccaaacatcccacctcctccattcctccct
cctcctgtcagtcaggctccacctctaatcccgcctccacggattcccatcactgttcct
ccacccaatttcccccctcccactggaggacctcctccttcacttattaatttagacaac
agtgggcacccgggaggatatgatggacgtcctgttgctccgtacccttttcctacaggt
gggtttcctccacccatgcaaggagctgttaacccctggcctggtttgatggacaactcg
aagcagtgggactactaccctcggcgagacaaagagagggaaaaagagcgagagagggag
aggccgagggaacgtggccatgagagagaccatagtccctcctctgtagcttataacagt
gatgaagaacggtttcgttcttaccgtgactacggagacagagggtatgagaggcatagg
gagcgatcgagccgcgagaaggaggagcgtcacagagaaaggaggcacagagagaaagag
gaagggaggcacaagtcatcacggagcagtagcagacggagacatgacagcgaggagggt
gacagtcaccggcgccataagcacaagaagtccaagaggagcaaagagggcaaggagccc
agcgaggagcgttctgctgaccaggagaaccaggaggccatggagtaa
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