Cyprinus carpio (common carp): 109091104
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Entry
109091104 CDS
T05134
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109091104 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109091104 (fip1l1b)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109091104 (fip1l1b)
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GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
109091104
NCBI-ProteinID:
XP_042572675
UniProt:
A0A9Q9VWW1
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Position
B1:complement(16550571..16562195)
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AA seq
558 aa
AA seq
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MSAEDADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISATSAPPVTEEVTAT
TNNTTTTITTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYAAYGGT
PVNLNIKSAGSRAYGAGSKVKGIDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYF
NYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITVAAHAAKPDF
SSPSNLYKAGLNPARISPPQWAGPASQEMSYYTKTPGTIDVIGGQTATISRVEGRRRHNL
EGNNIQVISEHTSSEAEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRMPIT
VPPPNFPLPTGGPPPSLIPTMDNSGHPGGYDGRPVAPFPFPTGGFPPPMQGAVNPWPGLM
DNPKQWEYYPRRDKEREKERERERPRERVHERDHSPSAVAYNSDEERYRSYRDYGDRGYE
RHRERSSREKDERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEG
KEPSEERSADQENQEAME
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggacgcggataaaaccaccaccactgatgcgagtgcaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaggaagccaaa
ctgacagcagccatcagtgcgacctctgctcctcctgttaccgaggaggtcaccgcgacc
acaaacaacaccactaccaccatcaccaccacgactggaaatggtgtggccagtcaggag
gaagcacctggagaagatgaagacagtgagagcgatagtgatgatgatgatgatgatgtc
cgtgtcaccattggcgatataaaaacaggagcgccacagtacgcggcatatggtggaact
ccagtgaatctaaacataaagtcagctggcagcagagcttatggagcaggttctaaagtg
aagggcatagacctcgaagctccaggcagcatcaatggcgttccagtcctggaagtggac
atggagtcctttgaggagaaaccatggaggaagccaggtgcggacttgtctgactatttt
aactatggttttaatgaggacacgtggaaagcatattgtgaaaagcagaagaggttacgc
atgggccttgacattctcaacattggatccaccaccagcaagatctcagttcagcagggt
cgcacaggtaacagtgagaaggagatcacagttgcggctcatgcagctaaaccagacttt
tcctccccatctaacctgtataaagcaggtctcaacccagcgaggatatcccctccacag
tgggcagggcctgcctctcaagaaatgtcctattatacgaagacgcctgggaccatagat
gtgattggcggacagactgccaccattagcagggtggaaggacgacgtcgccacaatctg
gaggggaataacatccaggtgatctcggaacataccagctctgaggccgaacccgccaag
atgcctcctcctttctttcccccgggaccactgcctccaaacatcccacctcctccattc
ctccctcctcctgtcagtcaggctccacctctaatcccacctccacggatgcccatcact
gttcctccacccaattttccccttcctactggaggacctcctccttcacttatccctact
atggacaacagtgggcacccaggaggatatgacggacgtcctgttgctccattccctttt
cctacaggtgggtttcctccacccatgcaaggagctgttaacccctggcctggtttgatg
gacaacccaaagcaatgggagtactaccctcggcgagacaaagagagggaaaaagagcga
gagcgagagaggccgagggaaagggtccatgagagagaccacagtccctctgctgtggct
tataacagtgatgaagagcggtatcgttcttaccgtgattacggagacagagggtatgag
aggcatcgggagcgatcgagccgtgagaaggatgagcgtcacagggagaggagacacaga
gagaaagaggaagggaggcacaagtcatcacggagcagtagcagacggagacatgacagc
gaggagggtgacagtcaccggcgccacaagcacaagaagtccaagaggagcaaagagggc
aaggagcccagcgaggagcgttctgctgaccaggagaaccaggaggccatggagtaa
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