Cyprinus carpio (common carp): 109091224
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Entry
109091224 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109091224
03015 mRNA surveillance pathway
109091224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109091224
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109091224
mRNA cycle factors
P-body specific factors
109091224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
DUF1722
Goodbye
Motif
Other DBs
NCBI-GeneID:
109091224
NCBI-ProteinID:
XP_042593434
UniProt:
A0A9Q9X1E5
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Position
A4:complement(1338828..1362713)
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AA seq
1269 aa
AA seq
DB search
MSSSSSMPAERKKSVNMEEKETGSFSNKDRDADRQAAAPKSKDETKMSAKKDGGKTAEDK
KRRAEEDKRKKEERERKKKKEEEKQRAEEEQKKKEEEEKRQQEEQEKKLLEEEARRQKEE
EAAQLKEKEEAEQLQQEAWERHHGRKELRVKNQHVQETRPEEAFFSRLDSSLKKNTAFVK
KLRTLTEQQRGSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYADF
APLLLAAWKRHFEARKEEKPPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIG
TDRDTHTHVSVIISFCKHCGDDIAGLVPRKVKNAVEKFGSSFPPSQIINAEKQQPFQNLL
REYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTL
ADLLDENMPELPVDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKA
FVPAILFKDNEKSSQISKEGREGNSTEELEMELEVLDITDEPIDLDVADETESEELAKKL
LDEQEQEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRA
LFTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTV
RFIGELAKFKMFPKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVL
LEQMMRKKQAQHLDGRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVT
TEKVLRQMRKLPWHDADEKSYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVD
GLLEDIRLGMEVNQPKFNQRRISSAKFLGHPNNHPTSEPAVIFRTLFSFISFGVNTDGSP
SPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWKKSLDVWTKDQP
FPIDIEYMITDTLELLRPKMKLCXALDEACAQVTQLEREFLVKLGLEKDGRSSSAMSENE
PLDEEDDDDEDEGGAETEEQSGNESEMNEPEEEEGSDNEEEEREEEEENTDYLTDSNKEN
ETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQL
KSQLKKSSAPSCTADADAEADISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcagtagcagtatgcctgctgaacgcaagaagtccgtcaacatggaggagaaa
gagacgggctccttcagcaacaaggacagagacgcagacagacaggccgccgcgcccaag
agcaaagacgagaccaagatgagcgccaagaaggacggaggcaagacggcggaagataag
aagagacgggctgaggaggacaagaggaagaaggaggagagggagcggaagaagaagaaa
gaggaggagaagcagagggcagaggaggagcagaagaagaaagaggaggaggagaagaga
cagcaggaggagcaggagaagaagctcctggaggaggaagccagacgacagaaagaggaa
gaggctgctcagctcaaagagaaagaggaggccgaacagctccagcaggaggcgtgggag
cggcaccacggccggaaggagctgcgcgtgaagaaccagcacgtgcaggagacgcgtccc
gaggaggccttcttcagccgcctggactccagcctgaagaagaacacggcgttcgtcaag
aagctccgcacgctcacggagcagcagcgcggctcgctgtcgcaggacttcgactcgctc
aacctcagcaagtacatcggggaagccgtgagctccatggtggaggccaagctgaagatc
tcggacgtgggctgcgccgtgcatctctgctcactcttccaccagcgctacgctgatttc
gcaccgcttctcctcgccgcctggaagagacacttcgaggcccggaaggaggagaagccg
cccaacgtgagcaaactgaggaccgacctgcgcttcatcgccgagctcaccatcgtgggt
ctgttcacggataaagaagggctgtcgctcatctacgagcagctgaagaacatcatcggc
accgaccgagacacacacactcacgtgtccgtcatcatcagcttctgcaagcactgcgga
gacgatatcgccgggctggtgccgcggaaggtcaagaacgcggtggagaagttcggctcg
tccttccctcccagtcagatcatcaatgcggagaaacagcagccgttccagaacctgctg
agagaatacttcacgtccctcaccaaacacctgaagaaagaccaccgagagctgcagaac
atcgagaggcagaacaggcgtatcctgcactctaaaggagagctcagcgaggacagacac
aagcagtacgaggagttcgccacctcctatcagaagctgctggccaacacacagacgctg
gccgatctgctggacgagaacatgcctgaacttcctgtggacaaaaccgtccaggaagag
cacggtccgggcatcgatatctttactccggggaaaccgggagagtacgatctggaagga
gggatctgggaggacgaggacgcgcgcaacttctacgagaacatggtggatctgaaggcg
tttgtccctgccatcctcttcaaggacaacgagaagagcagccagatcagcaaagaggga
cgagagggaaacagcaccgaggagttggagatggagttggaagtgctggacatcaccgat
gagccgatagatctggacgtagccgacgagaccgaaagtgaagaactggccaaaaagtta
ctggacgagcaagagcaggaggatgaggaggccagcaccggctctcatctcaaactcatc
gtggacgctttcatccagcagctcccaaactgcatcaacagagacctgattgacaaggct
gctatggacttctgtatgaacatgaacaccaagtccaaccgcaggaagttggttcgagct
cttttcacggtgcccagacagaggctggatctgttgccgttctacgctcgtctggtggcg
actctacacccgtgtatgtctgacgtggccgaagacctctgctcgatgctcaaaggagat
ttcagatttcacatcagaaagaaggaccaaatcaacattgagaccaagaataagacggtg
aggttcatcggggagttggccaagttcaagatgtttcccaaaacggacacactgcactgc
ctcaagatgctgctgtctgatttctctcaccatcatatcgagatggcctgcacactgctg
gagacgtgcggacgcttcctcttccgctcgccggagtctcacctgcgcacgagcgtctta
ctggagcaaatgatgcgtaagaagcaggctcagcatctggatgggcgttacgtgacgatg
gtggagaacgcttattactactgcaaccctccgccgatggagaagacggtgcgcaggaag
aggccgccgctgcaggagtacatccgcaaactgctctacaaagacctgtccaaggtcacc
acggagaaggtgttgaggcagatgaggaagctgccctggcatgatgctgatgagaagagt
tacctgatctgctgtatgatcaacatctggaacgtcaaatacaacagcatccactgcgtg
gccaacctgctggctggactggtggcgtatcaggaggacgtgggcattcatgtggtggac
ggcttgctggaggacatccgcctcggcatggaggtgaaccagcccaagtttaaccagcgg
cggatcagcagcgctaagttcctgggtcatccgaataaccacccaacttccgaacccgcc
gtcatcttccgcacgctcttctccttcatctcgttcggtgtgaacacggacggctctccg
agcccgctggacccccccgagcacctgttccgcatccgcttggtctgcaccctgctggac
acctgcggacagtacttcgaccgcggctccagcaagaagaagctcgactgcttcctcatt
tacttccagaggtacgtctggtggaagaagagtctggatgtgtggactaaagatcagccg
ttccccatcgacatcgagtacatgatcacagacacgctggagctgctgcggcccaaaatg
aagctgtgcntcgctctggacgaggcctgtgctcaagtcacacagctggagagagagttc
ctcgtcaaactgggcctggagaaagacggccgctcctccagcgctatgagtgagaacgag
cctctggatgaggaggatgatgatgatgaagacgagggaggagcggagaccgaggagcag
tctggaaacgagagcgagatgaatgaacccgaggaggaggagggctctgacaacgaggaa
gaggagcgtgaggaggaagaggagaacaccgactatctgaccgactccaacaaagagaac
gaaacggatgaagagaataacgaggtcactatccgcggcgggggactcaaacacgtggcg
tgtgccgaggacgaggacttcatccaggcgctggacaaaatgatgctggaaaacctgcag
cagcgcagtggagaggcagtgaaggtccatcagctggacgtggccattcccctgcagtta
aagagccagctgaagaaaagctccgccccctcctgcaccgcagacgcagacgcagaagca
gacatcagcgacaccatgcagttcgtcatgctcacgcgcaagggcaacaaacagcagttt
aagatcctgaacgtgccgctgtcgtctcatctggcggcgaatcacttcaaccagcagcag
gcggagcaggaggagcgcatgcgcatgaagaagctgacgctggacatcaacgagcggcag
gagcaggaggactatcaggagatgatgcagtcactcgctcagagacccgctcccgcaaac
accaacagagagcgccggccgcgataccagcaccccaaaggagcgcccaacgcagacctc
atcttcaagaccggcggcaggagacgctga
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integrated database retrieval system
