Cyprinus carpio (common carp): 109091547
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Entry
109091547 CDS
T05134
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109091547
09123 Folding, sorting and degradation
03018 RNA degradation
109091547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109091547
03041 Spliceosome [BR:
ccar03041
]
109091547
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109091547
mRNA cycle factors
Stress granule specific factors
109091547
Spliceosome [BR:
ccar03041
]
Complex C
Other components
Complex C specific factors
109091547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_10
RRM_5
RRM_3
YflT
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
109091547
NCBI-ProteinID:
XP_042629226
Ensembl:
ENSCCRG00000000215
UniProt:
A0A9R0BCX5
LinkDB
All DBs
Position
A16:23042802..23054622
Genome browser
AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLKEVFSKFGPALSIRVMTDDGGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQMMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQGMPNAVRPSGPRPQAFGAVRPASQVPRVIAPQ
RMASQAMGPRPSAAGAATGASQVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTGPSTAVPAV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtgctcccagttacccgatggcctcgctgtatgtgggcgatctgcacccg
gatgtgaccgaggccatgctgtacgagaagttcagtccagccgggcccatcctctccatc
cgggtgtgcagggacatgatgacccgccgctcgctcggttacgcgtacgtcaacttccag
cagcccgctgacgccgagcgcgccctggacacgatgaactttgacgtgatcaagggccgg
ccgctccgcatcatgtggtcccagcgagacccgtccctgcgcaagagcggcgtgggcaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctctacgacacgttctct
gccttcggcaacatcctgtcctgcaaggtggtttgtgatgagaacggctctaaaggatac
ggctttgttcacttcgagacccacgaggctgcagaaagagccattgagaaaatgaacggc
atgttgctgaatgaccgcaaagtgtttgtgggccgcttcaagtctcgtaaggagcgtgag
gcagagatgggcgcccgcgccaaagagttcacaaacgtttacatcaagaacttcggagaa
gatatggacgacgagaagctgaaggaagttttcagcaagtttggtccagcgctcagtatt
cgagtcatgaccgacgacggcggtaaatctcgaggctttggcttcgtcagcttcgagagg
cacgaggacgcccagaaggccgtggatgagatgaacgggaaagagctgaacgggaagcag
gtgtacgtgggtcgcgctcagaagaagggagagcgccagacggagctcaagcgcaagttt
gagcagatgaagcaggaccgcatgactcgctaccagggagtcaatctctacgtgaaaaat
ctggacgatggactcgatgatgagcgcctgcgtaaagagttctctccattcggcaccatc
accagcgctaaggtgatgatggaaggcggccgcagcaggggcttcggcttcgtctgcttc
tcgtctcctgaagaagccactaaagccgtgacggagatgaacgggcgtatcgtggccacc
aagccgctgtacgtggctctggctcagaggaaggaggagcgtcaggcgcacctcaccagt
cagtacatgcagatgatggccagcgtcagagccgtgccaaaccccgtcctcaacccctac
cagccagcgccaccttcaggatacttcatggccgctattccacaggctcagaatcgtgct
gcttactatcccaccagtcagctcgctcagctccgccccagtcctcgctgggccactcag
ggggtccgccctcagcatttccagggcatgccgaacgccgtcagaccctcggggccccgt
cctcaagccttcggcgccgtgcgtcccgcctcccaggtcccgcgggtgatcgcgccccag
cgcatggcgtctcaggccatgggtcctcgccccagcgccgcaggggccgccacaggggcg
tctcaggtgagaggagtgccgcagtacaagtacgcacctggagtccgcaacccgcagcag
cacatgcccactcagccacaggtgcccatgcagcagcctgctgtccacgttcagggtcag
gagcctctgacggcgtccatgttggcggccgcccctccacaagaacagaagcagatgctg
ggtgagcgtctgttcccgctcatccagaacatgcatcccagtctggctggaaagatcacc
ggaatgctgctggagatcgacaactctgagctgctgcacatgctggagtctccggagtct
ctgaggtcaaaggtggatgaagcggtggcggtgctgcaggctcatcaggccaaagaagct
gcgcagaagaccggccccagcaccgccgtgccggccgtctaa
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