Cyprinus carpio (common carp): 109091976
Help
Entry
109091976 CDS
T05134
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109091976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109091976
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109091976
mRNA degradation factors
5'-3' decay
Decapping complex
109091976
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
109091976
NCBI-ProteinID:
XP_042618643
UniProt:
A0A9Q9YEB9
LinkDB
All DBs
Position
A1:complement(32724822..32733623)
Genome browser
AA seq
769 aa
AA seq
DB search
MFHFQSLDDDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAGLDERVRDE
VDGAGDASSVDLSLSGSNAHSSAPPQPSSSSRLYPSIDERGGGDLAESLTHLILGSDPAI
AGVGAASSDRSLRPLMLSGQTPQPSALAGQSSLLLSYQQQHQVMHRGPAPLSQINSHSIW
ENSMGFSPVSSGLLTQKEDKTLMSIIKEVGLPNRPPALSREEGRDFSERVPPPRSSSPVI
GSPPVRAVPIGTPPKQPMSHVHTQQNNHPSAIQHVRASMPLRYPPPFPERLSPNNLLSIA
SSPLSHSPFPAGVGPVLSQIQRAQLLNSQVGPFQRGPAPPLLQGGVGGFRPFFGQSGPRV
GLHGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRKNRDPYSNLMTQ
REKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKKFLQTPEHQRDALLEQHKTHMVQLYNSLREKEWDDRVSDKQCLMIMSVR
KGKRLISRLLPFLPQPHAAAVVMGIARNLPALAKKDKHDQVLCWLVEPVTTVIQSMSSTS
LTDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSV
TRELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITSLTR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtctttagatgatgactgcaccctggaggaggaggaagggttggta
gaggaagaagatgaaattgaccagttcaatgatgacacttttggtgcaggtgcaatcgat
gatgattggcaggaggagcatgcccgcctcgcagggcttgatgagcgggtacgagacgag
gtggatggagcaggcgatgcctcctctgttgatctctctctcagtggcagcaatgcccac
tcttcagcccctcctcaaccctcctcttcctcccggctttaccctagcatagatgaacgg
ggtggtggtgaccttgcggagtcactgactcacctcatcttgggctcggatcctgctatt
gctggagtgggtgctgccagctcggacagatctctacgtcctctgatgctgtccggtcag
actcctcagccctcggcattagctggacagtcgtctctgctgctgagctaccaacaacag
caccaggtcatgcacagagggccagctcctctttcacagataaattctcacagtatttgg
gagaacagtatgggcttcagtcctgttagctccggactactcactcaaaaagaggacaaa
acgcttatgtccattatcaaagaggttgggcttccgaatcggcctcccgctctcagcaga
gaagaagggcgagatttttctgaaagggttccacctcctcgctccagctcacctgtgatt
ggaagtccacctgtaagggctgtacctattggaacacctccgaaacagcccatgagtcat
gtccacactcagcagaataatcacccttcagccattcagcatgtgagagcctctatgcca
ctgcgctaccctcctcccttccctgagcgtctgtcccccaacaacctactcagcattgct
agctcaccattgtctcattctccgttccctgctggtgttggtcctgttctgtctcagata
cagagagcccaacttctcaactctcaggtcggtccgttccaacgtggtccagctccccca
ttattacagggaggtgtcgggggtttcaggccgttctttgggcagtctggccctagagtg
ggtctccatgggccacctctcggacacgcacccatccgacacaacaccacccacctccac
ccacagcaccgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtc
ggcgggagaggtgttggagacaggaaaaaccgagatccttacagcaatctgatgacacaa
agagagaaggaatgggtagcaagaatccaaatgatgcagctgcaaagcactgatccttat
ctggatgactactattaccagaattattatgagaagatggagaagcgtcaggagcgggac
cgagacaacaggaaggagcacaccaccaaactcatcactcctcaggtggctaaactggag
cacacctatcggccagtgcaatttgccggatcgttaggaaaactcactgtctccagtgtg
aacaatccaaggaaaatgattgatgctgtggtgaccactcgcagtgatgatgaggaaaaa
agagagaagcaagtgtggaacaaaagacggcaaatactttacactgtggagaagatgtac
agtctactattagaagtgcaagactttgagaagaagttcttgcagacccctgagcaccaa
agagatgccctgctagaacagcataaaacccacatggtgcagctctacaactccctccga
gaaaaagagtgggacgaccgagtgagcgataagcagtgcttgatgatcatgtctgtgcgt
aaggggaaacgcctcatctctagactcctccccttcctgccacagccccacgctgctgct
gttgtcatgggaatagccaggaaccttccagccctggccaagaaagacaaacacgaccag
gtactgtgttggttggtagagccagtgacgacagtaatccagtccatgtcgagtacctcc
ctcactgatctcctccaggagctgcagggcagtgaaggacagcttccccttgtgctgcaa
aataagtttggagtgacgttgctctatctgattctgagtgaaggagagaggatgcagagc
tccgatcccaactgtcagctcatggatgataaccgctggactgaattggtgttctctgtg
acgcgggagcttttgaaggtcccgtcctctgcactctcatcaccgctgttcactccccca
aacctagtgtcactgttctctagatatgtggaccggcagagactcgagctcttgcaggag
aagctacagatcacctccctgaccaggtag
DBGET
integrated database retrieval system
