KEGG   Cyprinus carpio (common carp): 109094666
Entry
109094666         CDS       T05134                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109094666
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109094666
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109094666
   03041 Spliceosome [BR:ccar03041]
    109094666
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109094666
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109094666
Spliceosome [BR:ccar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109094666
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 109094666
NCBI-ProteinID: XP_018963931
Ensembl: ENSCCRG00000035308
UniProt: A0A8C1LHX9
LinkDB
Position
B4:7140908..7142192
AA seq 96 aa
MSTALESYINRTVAIITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgtctacagctcttgagagctacattaaccggacggttgctattatcacttcagatggc
agaatgattgtggggacgctaaagggatttgatcagacgatcaatctcatcctggatgaa
agccatgagcgggtgttcagctcttcccagggtgtagagcaggtggttctgggactgtat
attgtcagaggcgataatgtggctgtaatcggtgaaatcgatgaagaaacagattctgcg
ctggatcttggaaacataagagcagaaccgctcaactctgtggcgcactaa

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