Cyprinus carpio (common carp): 109094934
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Entry
109094934 CDS
T05134
Symbol
nphp4
Name
(RefSeq) LOW QUALITY PROTEIN: nephrocystin-4
KO
K16478
nephrocystin-4
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccar03037
]
109094934 (nphp4)
Cilium and associated proteins [BR:
ccar03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
109094934 (nphp4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPHP4_C2_3rd
NPHP4_C2_2nd
Ig_NPHP4_1st
Ig_NPHP4_4th
Ig_NPH4_3rd
Ig_NPHP4_2nd
NPHP4_SK
Motif
Other DBs
NCBI-GeneID:
109094934
NCBI-ProteinID:
XP_042618964
Ensembl:
ENSCCRG00000026720
LinkDB
All DBs
Position
A8
Genome browser
AA seq
1402 aa
AA seq
DB search
QPGKLLDVFRDVCQGTLTLAFKTFPGRLIVLKKARTCLTRHDRDPASQSNSQTSFRIFSR
SAAGLQTDGLHIKQVVYFHTSLCLSPLVELVSLSTRADGSQDAVGSGFGLLQLFTGRADT
IISQGEGRLSLFNGTPRALLHPTLKDPLHMNGILSVMEGSQLLKSIQPHPALTPIMHLLP
PNILVSGHDSIPGVVSSTDTGTSDALRKPRLLLKSFLCVLDGLRVTLFPSMEVFESNLLQ
LHNRDCQNTNRGLEGRSVNAQERRLQVGVHNGXGWVEKPHVLVLEREAKGSRADRARGAS
TSSSFRQTSTDLLSASCSDGLSLRGSVELKMMRDVAFSIVFQLQYVFSCPLAGDGQMTST
AVPRAAFMHCVRWCAWSLFSDPEGPGENVSLHLQGGALPNPWAAMVYSASTQQTDSGKCV
IKFKFSSSVEGASCSTALNVSHRETSAPKKLLSASQDKHILEATTSMLQSPRSPGLSLSQ
LAATSRYPTMSHTVGSPWQQQLPSLLSPSPMASAHQLSHVERPVAGGIAHLELSVQETEG
NRSEEEDEMEELTFASVHAPVITLGTHASGSSRSTSRRSLAQLSSSGFPQILDIQNRVAE
VLDPSEPVNLNPQREETDPLQANTLIIHFLSLPRVPQAGVNSDWPSTVHFTFQLYRFPPV
TTEHLKLLDPERNSNLKSNSDYPCVLSVINKDGTFSSGCPGLQLHYRVHPQFLKXKRGWF
LRYLALHSLQTDVWDSESLMLIGSAAVELKHMLRQGCAAIQVNHELEVITTEYLQDANFA
SRHDGKHNTTPAISVYTTLKGILHLRLGNVGGSVTNSQSSLALPPLLSHVVQPSDAPQGF
AGGGVPALTALQLNASNARRARRLPEIDSELARLLQSTMREVGGAALHQQAEAKEVRQRK
IDRMAAVRQHEEQKATPPFQDSSNVTRHRAERVRRSRDLHVIEAYRECCKVQEITNMLSQ
AITTKHTLYATLGTAEFFEFVLKNPFNVPQTVTIECDDPELSVIVKNEWRYFKELTKTLT
PLEEEMFHLKESTQTPQVYLWPKESIHVPFKYQTFICGHTFSIQDTKGLKTSRSSQMAQK
HLSNTIHAKSIKVLFRGEDKKPLAICQVDVEPTPHVVDQTFHSYQPELTFLKKAIRLPAA
WDNTADGSATLHVRCSDPNVICHTTNLSPGELKVKGSPSPQIRKFFITIFIDPWLASPAQ
IWQVYVHYLQRMDLSCVCGTLSWHSLVLHGTQAIRRVKCYTSHPLELQVDPGEVFALPAQ
GFQDVCVGLRALHPGSRFFYLNVVDVDTRQLIASWLLCITCRQPVISKAFEISVPVDGGK
GSNKKISFTNPYSSSRAFNLHTDRPDLLQFKEEQFQIGGGELYTIGLRFAPSQNPGMEEI
LIFINDRQDKNEDTYCVRVQYR
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
caacctggaaagcttttagacgttttcagggatgtttgccagggaacattaacgctcgcc
tttaagacgttccctggtagattgatagtactgaagaaagctcgcacatgtctgactaga
catgatcgtgatcccgcttcacagtcaaacagccagacaagcttcaggatcttctcaagg
tctgcagctggtcttcagactgatggacttcacattaaacaggtggtgtacttccacact
tccctgtgtctgagtcctttggtggagttggtgtctctgtctaccagggcagatggttcc
caggatgcagtggggtcagggtttggactgctccagctcttcacaggtcgcgcagacacc
atcatctctcagggggagggcaggttgagtctgttcaatgggacccccagagccctcctg
cacccaacactgaaagaccctctgcacatgaatggcatattatcagtgatggagggctct
cagttgctcaaatccattcagccacacccagctctcactcccatcatgcacctgctcccg
cccaacattctagtgtctggacatgacagcatccctggtgtggtgtcgtccacggacaca
ggcacatcagatgcactgcggaagcctcgtcttctgttaaagagcttcttgtgtgtgttg
gatggcctacgtgtgacactcttcccctccatggaggtcttcgaatctaacctgctccag
ctgcacaacagagactgccagaatacaaacaggggtctggagggacgctcagtcaatgcg
caggagcgcaggctgcaggttggggtccataacggctgaggttgggtggagaagcctcat
gtgttggtgctggaacgtgaggccaaaggaagccgagcggacagggctcgtggagcaagc
acaagcagcagcttcaggcagacctcaacagatcttctttctgcctcctgcagtgatgga
ctgtctcttcgtggcagtgtggagctgaagatgatgagggacgtggctttcagcatcgtc
ttccagctccagtatgttttctcttgtccactggctggagatgggcagatgacatccaca
gctgtgcccagagcagcgtttatgcattgtgtgcgttggtgtgcttggagtctgttttcg
gatcctgagggccccggagagaatgtaagcctccacttgcagggcggtgctctccccaac
ccttgggctgccatggtctactctgcaagcacacagcagacagattcggggaaatgtgtc
atcaagttcaagttttcatctagtgtggaaggagcttcttgcagcacggcattgaatgtg
agccaccgggaaacatcggcacctaagaagttactttcagcatcccaagataaacacatc
ttggaggcgacgacttcgatgcttcagtctccacgtagcccagggctgtctctctctcag
ctggctgcgacttcacgctacccaaccatgagccacacggtggggtctccatggcaacaa
cagctcccctctctgctttctccctccccgatggcatcggcccaccagctgtcacatgtc
gagcgtccagttgccggcggcatagctcatctggagctgagtgtgcaggagacagaggga
aacagaagtgaggaagaggatgagatggaggagctgaccttcgcttcagtgcacgcccct
gtcatcaccctcggaacacacgcttctggctcctccagatcgacctcccggagatctctg
gcacagctctcctcctctggttttcctcagatcctggacattcagaaccgggtggccgag
gttctggatccttctgagcctgtgaatcttaacccccagagagaagaaacagaccctctg
caggccaacactctcatcattcattttctatctctccctagggtccctcaagctggtgta
aattcagactggcccagcactgtccatttcaccttccagctttaccgcttcccccctgtc
accacagagcatctgaagctgcttgacccggaaaggaacagcaacctgaaatccaactct
gattacccctgtgtcctctctgttatcaacaaggacggcacattcagctctggttgtcct
ggtttgcagttgcattaccgagttcacccgcagttcctcaagnncaaacgaggctggttc
ctacgatacctggcactccactccctgcagactgatgtctgggacagtgaatccttaatg
ctgattggttcagccgctgtggagctgaagcatatgctgcgtcaaggctgtgcagccatc
caggtaaaccatgagctggaagtgatcactactgaatacctgcaggatgccaactttgcc
agcaggcatgacggcaagcacaacactactccagccatcagtgtctacactacattaaaa
ggaattctgcatctgcggcttggcaacgttggtggcagtgtgacaaattcccagagttct
ttggctcttcctccattgctctcccatgtggtccagcccagcgatgcccctcagggtttt
gcgggaggaggtgtccctgctttaacggccctccagcttaacgcaagcaatgccagacga
gcccgccgattgccagaaattgacagcgagctggccagactgctacaaagcaccatgagg
gaagtaggcggagccgcactgcatcagcaggctgaagcgaaggaagtgcgccagaggaag
attgacagaatggcagctgtccgtcaacacgaggagcagaaagccacgcccccttttcag
gacagctcaaacgtcacgaggcatcgggcagagcgtgtgaggcgttcccgtgacctgcat
gtgattgaggcctatcgtgagtgctgtaaagtacaggagatcaccaacatgctctctcag
gcaatcactaccaaacacactctctacgccacactcggaacagcagagttctttgaattc
gtgctcaagaatccattcaacgttcctcagactgtcaccattgaatgtgatgacccagag
ctcagtgtaatcgtgaaaaatgagtggagatatttcaaggagttgacgaagactctgact
cctctagaggaggagatgtttcacttaaaggagagcacacagactccacaggtttacctg
tggcccaaagaaagtatccatgtccccttcaagtaccagaccttcatctgtggtcacacc
ttctctattcaggatacaaaaggcttaaagacttcaagaagttcacagatggctcagaaa
catctgtccaatacaattcatgccaaatccatcaaggtgctgttccgcggggaagacaaa
aagcctctggcgatctgccaggtggatgttgaaccaaccccacatgtggtggaccagacc
ttccattcctaccagcctgaactcaccttcctaaaaaaggccattcgcctgcctgcagcc
tgggacaacacagcagatggttctgccaccctccatgtgcgctgcagcgaccccaatgtc
atctgccacaccaccaacctgtctccaggagaactgaaagtaaaaggtagcccaagtcca
cagattaggaaattcttcattaccattttcattgacccttggctggcctcccctgcgcag
atctggcaggtatacgtgcattacctgcaaaggatggacctgagctgtgtgtgtggcact
ctgagctggcattcactggttctgcacggcacacaagccattcgcagggtcaagtgctac
acatcgcatcccctcgagcttcaggtggatccaggtgaagtttttgctcttcctgctcag
ggatttcaagatgtctgcgtgggcctgagggctctgcaccctggaagccgtttcttttac
ctcaatgtagtcgacgtggacactcggcagctgattgcctcctggctgctgtgcatcaca
tgccgacagcctgtaatctccaaggcatttgaaatcagcgtccctgtagatggagggaag
ggcagcaataaaaaaatcagtttcacaaacccctactcttcctccagagcattcaatctg
cacacagatcgcccagacctgcttcagtttaaagaggagcaatttcagattgggggaggg
gagctctacaccatcggcctgcgctttgctccgagtcagaaccctggcatggaagagatt
ctcatctttatcaatgacagacaggataagaacgaggacacttactgtgttagggttcag
taccgataa
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