Cyprinus carpio (common carp): 109096268
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Entry
109096268 CDS
T05134
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03320
PPAR signaling pathway
ccar04148
Efferocytosis
ccar04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109096268
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
109096268
03320 PPAR signaling pathway
109096268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109096268
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ccar03310
]
109096268
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
109096268
Nuclear receptors [BR:
ccar03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
109096268
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
109096268
NCBI-ProteinID:
XP_042612711
UniProt:
A0A9R0AY61
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Position
A5:28982270..29029755
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AA seq
509 aa
AA seq
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METKPFLSLGLLKNPCSVAPPCLRSWPGDAGSSPNGCSSFMGTYPLQQRRISTDSSGQLS
SSPLSSSMGHRCISNHPLHPPLHNPSAMSSSPGQLHSPISTLSLPINGLHSPYPIISSPM
GHPSMSGPSSTSMTFRPSLSPQLTSPMNAVSSSEDVKPPLGLNGVMKVPAQPTGTSLSLT
KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCR
YQKCLAMGMKREAVQEERQRAKERSEDEFSSCANEDMPVEKILEAELAVEPKTETYVEAN
LSAPANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASF
SHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI
VLFNPDSKGLSNSSEVEALRERVYASLEAYCKHRYPDQPGRFAKLLLRLPALRSIGLKCL
EHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttgtctctagggctcctgaaaaacccctgctcagtagcaccg
ccgtgtttgcggagctggccgggcgacgctggcagttcgcccaatggctgctccagcttc
atgggtacatacccgctacaacagcgcaggatatccacagactcctccggccagctctcg
tcgtctcctctgagctcctcaatgggtcaccgatgcatcagtaaccatcctctccacccg
cccttgcacaacccatccgccatgagctccagcccgggtcagctgcattcgcccatcagc
accctcagcttgcccatcaacggcctccactcgccataccccatcatcagctcgcccatg
ggccatccttccatgagcggcccgtcctccaccagcatgaccttcagacccagcctgagc
ccacagctcacttcacccatgaatgcagtcagtagttcggaggatgttaaaccccctctg
ggtctgaacggggtgatgaaggtcccggcacagcccacaggcacatccctctccctcact
aaacacatatgtgccatttgcggagaccgttcatcaggtaaacactacggggtgtacagc
tgtgagggctgtaagggcttcttcaagagaacggtgagaaaggatttgacgtacacttgc
cgagacaacaaggactgtttaattgacaaacgccaacgcaaccgctgccagtactgccgc
tatcagaagtgcttagccatgggaatgaagagagaagccgttcaggaggagcggcagcgg
gcgaaggagcggagtgaggatgagttcagcagctgtgccaatgaggacatgcccgtggag
aagattctggaagccgaactggcagtggaaccaaagacggagacctacgtggaggccaac
ctgagtgcgcctgccaattctcctaacgaccctgtaacaaacatctgccaagcagctgac
aagcagctctttaccttagtggagtgggccaagcggatacctcacttttctgatctccca
ctggatgatcaagtcatcctcctgcgagcagggtggaatgaactcctgattgcctctttt
tcgcatcgttccatagctgtgaaagatgggatattattagctacaggccttcacgtccac
agaaacagcgcacataccgccggtgtgggagccatctttgacagagtgttgacagagctt
gtgtcaaagatgagagacatgcaaatggacaagactgaacttggatgcctgcgggccatt
gttctgttcaatccagattcaaaaggactgtctaattcatcagaggtggaggcattaagg
gaaagagtgtatgcatctctagaggcctactgtaaacacagataccccgatcagcctggg
agatttgccaagctgttactgcgtctgcctgccctgcgctccatcggcctaaagtgtctt
gaacatctcttctttttcaagttaatcggagacacacccatcgacactttcctaatggaa
atgctcgaagcgccacaccaaatgacataa
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