KEGG   Cyprinus carpio (common carp): 109096741
Entry
109096741         CDS       T05134                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109096741
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccar03041]
    109096741
   03036 Chromosome and associated proteins [BR:ccar03036]
    109096741
Spliceosome [BR:ccar03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109096741
 Complex B
    109096741
 Complex C
   U2 SnRNP specific factors
    109096741
Chromosome and associated proteins [BR:ccar03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    109096741
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ TPR_DNAAF5 HEAT_EF3_N HEAT_MROH2B_C HEAT_ECM29 TPR_IPO5 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG PIK3R4-like_middle Adaptin_N Phage_T7_Gp15
Other DBs
NCBI-GeneID: 109096741
NCBI-ProteinID: XP_042587384
Ensembl: ENSCCRG00000006506
UniProt: A0A8C2JGJ7
LinkDB
Position
B9:complement(20586193..20596976)
AA seq 1311 aa
MAQIAKTHDDIEAQILEIQGMKAALVEGAEQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDDEDSSTSLLGPKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQHLSKEEREIRLQMLEKAKSG
ELKAVNGSAASQAAAAKRKRRWDQTADHTPSNTTPRKVSSWDQADGGSDTPGHTPSNSRW
DETPGRAKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRKNRW
DETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSSTPLL
TPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQTEDRSMKQVNDQPSGNLPFLKPDDIQ
YFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNSYVRYELEYFL
NT seq 3936 nt   +upstreamnt  +downstreamnt
atggcgcagatcgccaaaacacatgacgacattgaggctcagatcctggaaatccagggg
atgaaagctgccctggtggagggagctgagcaaggggttggacttgattccactggatac
tatgaccaggagatctacggaggcagcgacagccgctttgctggatatgtgacatcaatt
gctgccaacgagcaggaagatgatgatgatgaagattcgtccacaagtctgcttggaccg
aagaaacctggatatcatgcaccggttgcaattctcaattccattcctcagtcggatgag
cagtatgatccctttgctgaacacagaccacagaagatttcagaccgcgaggacgagtac
aagaaacgcagacaaaagatgatcatctccccagagcgtcacgacccatttgctgatggg
ggcaaaacgccggaccccaagatgcaggtcaggacgtacatggatgttatgaaggagcag
catctgtccaaagaggagagagagatcaggctgcagatgctagagaaagctaaatctgga
gagctgaaagcggtgaacggctctgctgcatctcaggctgctgcggccaaacgcaaacga
cgctgggatcagacagctgaccacacccccagcaacaccacacccagaaaagtgtccagc
tgggaccaggcagatggaggttctgatacaccaggccacacaccttccaacagtcgctgg
gatgagacacctggccgcgccaaaggtagcgagaccccaggagctactccgagcacccgt
atgtgggaacccacaccaagccacaccccagctggagctgccacgccaggtcgagacacc
cctggacatgccactcctggccacggaggggccacttccagtgtgcgcaagaaccgctgg
gatgagacaccaaagacagagagagagacacccggtcatggaagtggctgggctgagact
ccacgtacagacagaggagatgagtcagtgggtgagacacccaccccaggtgcaagcaag
aggaagtcaagatgggatgaaacaccagccagtcagatgggctcttcaactcctctgctc
acccctggaaaaacccctctgggcacacctgctatgaatatggccacacccactccaggt
cacctgatgagcatgactccagaacagctgcaggcttggcgctgggagcgagagattgac
gagaggaatcgcccattgactgatgaggaacttgatgccatgtttccagaaggatacaaa
gtactgccgccaccagcaggctatgtacccatccgcaccccagcacgtaagttagctgcc
acccccacccccatcggaggcatgactggcttccacatgcaaacagaggacagatctatg
aaacaagtcaacgatcagccctccggaaacctgcccttcctcaagccagatgacatccag
tactttgataaactgctggtcgaagttgacgagtccaccctcagtccagaagaacagaag
gagcgcaagatcatgaagctgctcctcaagatcaagaatggaacgcctcctatgaggaag
gctgctcttcgtcaaatcacagacaaagccagagagtttggtgcaggacccctctttaac
cagatcctgccgttgttgatgtctcctacactggaggaccaggagcgtcatctcttggtg
aaagtcattgaccgtatcctctacaaacttgatgacttggttcgaccatatgtccacaag
attcttgtggtgattgagcccttgcttattgatgaagattactatgctagagtagagggt
agagagatcatctccaacttggcaaaggctgctggtctggccactatgatctctaccatg
aggcctgatattgacaacatggacgagtatgtgagaaacacgacagctcgtgcttttgct
gttgtagcgtctgccctgggcattccatctctcctgcctttcctcaaggctgtttgcaag
agcaagaaatcctggcaggctcgtcacacgggtatcaagatcgtacagcagatcgctatt
ctcatgggctgtgctatcctgccccatctccgcagcttggtggagattatcgagcatggt
ctcgtggatgagcagcagaaagtgcgaacgattagtgccctggctattgctgccctggct
gaagctgctacaccatacggtatcgagtcctttgattctgtgctgaaacctctttggaaa
ggtatcaggcaacacagaggcaagggtcttgctgccttcttgaaagctattgggtacttg
attcctcttatggatgctgaatacgccaactattacaccagagaagtgatgcttatcctt
attcgagagttccagtcacctgatgaggaaatgaagaagattgtcctcaaggtggtgaag
cagtgctgtggcacagatggtgtggaagccaattacattaaaacagagattttgcccccc
ttcttcaaacatttctggcagcacagaatggcattggataggcgcaactacagacagtta
gtggacactacagtggagctggccaataaggtaggagcagctgagattatctcccgtatc
gtggatgacttgaaggatgaagctgagcagtacagaaaaatggtcatggagacaattgag
aaaattatgggcaaccttggtgccgctgacatcgatcacaaactggaggagcagctaatt
gatggaatcctgtacgccttccaggaacagaccactgaggactctgtgatgctcaatggc
tttggtacggtggtgaatgctctgggtaagagagttaaaccgtacttgcctcagatctgc
ggtacagtgctttggcgtctcaacaacaaatccgccaaagtccgtcaacaggccgctgac
ctgatttctcgcacagcggtggtcatgaagacatgtcaagaggaaaagctgatggggcat
ttgggtgtggtgttgtatgagtatctgggagaagaatatccagaagtgctgggtagcatt
cttggagcccttaaagctattgtcaatgttattggtatgcacaagatgacaccacctatc
aaagacttgcttccacgtttgactccaatcttgaagaacagacatgagaaggtgcaggag
aactgcattgatctagtgggcagaatcgctgacaggggtgcagagtatgtgtctgccagg
gaatggatgcgcatctgttttgaattgctagagttgttgaaagcccacaagaaggccatt
cgcagagctactgtcaatactttcggctacatcgccaaggccattggtcctcacgatgtg
ctggccacgctactcaacaatctgaaggtgcaggagcgtcagaaccgtgtgtgcacaacg
gtagccatcgctatcgtggccgagacgtgttcgccgttcaccgtgcttcctgcgttgatg
aacgagtaccgtgttcctgaacttaacgttcagaacggtgtcctgaagtctctgtccttc
ctgttcgagtacatcggtgaaatgggcaaagattacatctatgccgtcacacctttgttg
gaggatgctctaatggacagggatcttgtacacagacagacagctagtgctgtggtgcag
catatgtctctgggagtgtatggctttggctgtgaagattctctcaatcatttgcttaac
tatgtgtggccaaacgtcttcgaaacgtcccctcatgttatccaagctgtcatgggggcc
cttgagggtctgcgggtggcaattggaccctgccgcatgctgcagtattgcttgcagggt
ttgttccatccagctcgcaaagtgcgtgatgtgtactggaagatctacaactccatctat
atcggctcccaggatgcactgatcgcacattatcctcttgtctacaatgatgagaagaac
tcatacgttcgctatgagctggagtacttcctgtga

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