Cyprinus carpio (common carp): 109097177
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Entry
109097177 CDS
T05134
Symbol
chd1
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109097177 (chd1)
03036 Chromosome and associated proteins [BR:
ccar03036
]
109097177 (chd1)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109097177 (chd1)
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
109097177 (chd1)
SLIK complex
109097177 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
109097177
NCBI-ProteinID:
XP_042588032
Ensembl:
ENSCCRG00000003831
ENSCCRG00000046162
UniProt:
A0A9Q9WR36
LinkDB
All DBs
Position
B10:2849353..2872375
Genome browser
AA seq
1755 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSHSD
SEKSKEKNDQDSKIDGAAFWKSNPSILTVQRTAMLRKQQLQQQQSSSNTGSDEDSSSSDE
SDDESKSRTKGSGSDSDSGSGSGSGSSDSSAEEQENSDESVSDYEPSHKVKSRKPSNKAN
ARNGKNNKAPKKKPSRSSSDDEDDYKKALAGPRRQATVNVSYKEDEELKTDSDDLVEVCG
EDVPLPEEDEFETLERVMEMRIGRKGATGAVTTVYAVEADGDPNANFDPSRQPGEVQYLM
KWKNWSHIHNTWETEETLKQQNAKGMKKLDNFKKKEQEKKKWLKAASPEDVEYLNCQQEL
MDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLSYFECSWEDGALIARKFQKCIDEY
MSRNQCKTIPSRECKVLKQRPRFVPMKKQPHYIGADGLELRDYQLEGLNWMAHSWCKGNS
CILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQLWAPQINVVVY
LGDIRSRNMIRTHEWMHPQTKRLKFNVLLTTYEILLKDKSFLGNVSWAFIGVDEAHRLKN
DDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPIKFHSWELFEEEHGKGRDS
GYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWIFFCLFNFFFFGC
ILRRXCLVMVMMELKKCCNHCYLIKSPEEEFYNRQEGLQHLIRSSGKLILLDKLLVRLKE
RGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLL
STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEEI
IERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPFNKEELSAILKFGAEELFKEPEG
EEQEPQVLDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIDMDTERDNKN
WDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQSNFNGNEGRRSRNRRYSGSDSDS
VSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSE
HDLRRLAETVHNGCLKTLRENPCGPERTSGGRRGKVKGPTFRISGVQVNAKLVISHEEEL
APLHKAIPADPEERKRYIIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGSWEMIKMDPD
LNLTHKAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSRKRKPRGKKNKAVKPKVDEVT
NSLSSAPPSDKSSEEEDEKEEEEKETPPVKPPNRRARVSERPVKEEEEDEDEDEESDEDE
PEDKEPEEEDIMEKVVKKEIKKEKKEEGRDSKEREPKEKEIKSEPEEETPAEKAVEVKAE
VKKADTPVHTPSGGDALPLSDESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQ
LEHTRQCLIKIGDHITECLREYTNPELIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKK
RQENAQPNFLLCVNLCSFVFECVVLLLELLRGXRSRGRXRSDRHHSSRYHEHSKDRHAGD
SYRKSSDPRKRPYSSFSNGKDHREREREQYRERGERQDSRYYSDSKHRKLDEHRSSREHR
SESNSKDRTHAEHRLHSEHRSASDYTHPKSSRDYRYHADWQMEHRPRSPLGHRSPFEYSS
DHRSTPEQVWSGRKT
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggatggacgcagtgaggatgaaagtgtcagcaacagcagcggagagtccagtaattca
gatgatgagtctgggtcaggatcgggctcgggctcgagttcaagcagcagcagttctagc
agtagccaatcagggagcagtgactcaggaagcggctcggattctggaagccactcggac
tcggagaaatccaaggaaaagaatgatcaagacagtaaaatcgatggagcagcgttttgg
aagtccaatcccagtatcctgacagtgcaaaggacagccatgctcaggaaacaacagctt
caacagcagcagagctcctcaaacactggctcagacgaggactcttccagtagtgatgag
tcggatgatgagtcaaagagcaggactaaagggtctggttcagactctgactcgggctct
ggttcaggaagtggctcgtctgactcttcagcagaggagcaagagaacagtgacgagtcc
gtgtcagactatgagcccagtcacaaagtcaagagcagaaaaccttcaaacaaggccaat
gccaggaatgggaaaaataacaaagctcctaagaagaagccctcccgctcctcctcagat
gatgaggatgattataaaaaagctctagcgggacctcggcggcaggccacagtcaatgtg
agctacaaagaagatgaggaactgaagactgattcagatgacctggtggaggtgtgtgga
gaggacgtcccactgccggaggaggacgagtttgagacgctggagagagttatggaaatg
aggataggccggaaaggagcaacgggggccgtaaccacggtgtatgcagtagaggcagat
ggagaccccaacgccaactttgaccccagcagacagccaggagaggtgcagtacttgatg
aaatggaagaactggtcccacattcacaacacctgggagacagaggagacgctcaaacaa
cagaacgcgaagggcatgaagaaactggacaacttcaagaaaaaagagcaggagaaaaag
aaatggctcaaagctgcctcgcctgaggatgtggagtacttgaactgtcagcaggagctc
atggatgacttgcattcacaatatcagcttgtggagagaatcatcggacattcaaatcag
aagtccgccgcaggttatccagattatctttgtaaatggcaggggctgtcatacttcgag
tgcagctgggaagacggtgctctcattgccagaaagtttcagaagtgcattgatgaatac
atgagtcggaatcagtgcaaaaccattccctccagagagtgcaaggttttaaaacagagg
ccacggtttgtgcccatgaagaagcagcctcactacattggcgcagatgggttggagctg
cgggactatcagttggagggtctgaactggatggctcattcttggtgcaaaggaaacagt
tgcatcctggcagatgagatgggtctgggcaaaaccatccagactatcagcttcctcaat
tacttgttccatgagcaccagctttacgggccgttccttctggtggtgcctctgtctaca
ctcacgtcctggcagagggagatccagctctgggctcctcagataaatgttgtggtgtac
ctgggagacatcagaagcagaaacatgatccggacacatgaatggatgcatccgcagacc
aaacgactgaagttcaacgttctgcttactacatatgaaattctgctgaaggataagtca
tttttaggaaatgtgagctgggcgttcattggtgtagacgaggcccatcggctgaagaac
gacgactcgctcctctacaagactatgatcgagttcaagtccaaccacaggctcctgatc
acaggcacacccctccagaactcactcaaagagctctggtctctgctgcattttataatg
cctataaaatttcactcgtgggagctgtttgaagaggagcatggcaaaggcagagactct
ggctataccagccttcataaggagctggagcccttcctgctgcgcagagtgaagaaggat
gtggagaaatctctgcctgccaaggtggagcagatcctcagggtggagatgagcgccgtt
cagaaacaatactacaagtggatatttttttgtttatttaatttttttttttttgggtgt
atattgaggaggtaatgtttagtcatggtcatgatggagctgaagaaatgctgtaaccac
tgctacctcattaaatcccctgaggaggagttctacaacagacaagaaggcctacagcac
cttattcgcagcagtgggaagctgattcttctggataaactgctggttcggctgaaggaa
cgagggcaccgtgtgctcatcttctcccagatggttcggatgctggacatcctggctgag
tacctgaagtaccggcagttcttattccagagactggatgggtccataaagggtgagatg
aggaagcaggcgttagatcatttcaatgcagagggctccgaggatttctgcttcctgttg
tccacgcgagcaggtggtctgggcattaacctggcctctgcggatacagtggtcattttt
gactctgactggaaccctcagaatgatctgcaggcccaggccagagcgcacaggattggg
cagaaaaaacaggtgaatatataccgtctggtgacaaagggctcggttgaggaagagatt
attgagagagccaaaaagaaaatggtgttggaccacctagtgattcagaggatggacacc
actggaaagacagtccttcacacgggtgctgctccttccagctctactccattcaacaaa
gaggaactgtcggccatcctgaaatttggtgctgaagaacttttcaaagagccagaagga
gaggaacaggaacctcaggtcttggacatcgatgaaatcctgaagagagcagagaccaga
gagaacgaccctggaccgtcgactgtaggagaggagctcctctcacaatttaaggtggca
aatttctccatgatggaggaggaggagattgacatggacaccgagagggacaataagaac
tgggatgacattatcccagaggagcagcggaggagactcgaggaggaggagcgacaaaaa
gagctagcagagatctatttactgccccgcatgaggaagtgtgctaaacagtccaacttt
aatggaaatgagggcaggcgtagccggaacagacggtactctggttcagacagcgattct
gtctctgatagaaagaggcccaagaaacgaggaagacctcgaactattccaagagagaac
attaagggtttcactgatgctgaaatacgcaggtttatcaaaagttataaaaagtttggt
ggccctttagaacggcttgatgctatcgctcgagatgctgagctggtggataaatcagag
catgatctgcggcggctggctgagaccgtacacaacggctgtttgaaaacactaagggag
aacccctgtggacccgaacgaacctcaggaggcaggcgagggaaggtgaaaggacccacc
ttcaggatctcaggggttcaggtcaatgctaagctggtgatctctcatgaggaggagctg
gcaccattacacaaggccattcccgctgaccctgaggagaggaagaggtatataatccca
tgccactcaaaggcagctcattttgacattgagtggggtaaagaggacgactccagcctg
cttattgggatttatgagtacggttatggcagctgggagatgatcaagatggacccagac
ctcaacctcacacataaggccaaacagttgcagacacgagccgactacctcatcaaatta
ctgagcaaagacctcgccaagaaggaagcacagaaacaggccggcacagcaaattcacgc
aagagaaaaccacggggcaagaagaataaagctgtaaagccgaaggtggacgaagtgacg
aacagtctgtcctctgcaccgccatcagataagagctctgaagaagaggatgagaaagag
gaagaggaaaaggaaactcctccagtcaagccgcccaacagaagagcacgtgtgtcagag
cggccggtaaaggaggaggaggaggatgaggatgaggacgaagagtctgatgaggacgag
cctgaggataaagagccagaagaggaggacataatggagaaagtggtcaaaaaagagatt
aagaaggagaagaaagaggagggtcgggacagcaaagagcgggaaccaaaagagaaggag
attaagtcagagcctgaagaagagactcctgcagagaaggctgtggaggtgaaagcagag
gtgaagaaagctgatacccctgtgcacacgccctccggaggagatgcacttcccctgtct
gacgagtctgaagaactggaccagaaaaccttcagcgtgtgtaaggagcgcatgcggccg
gtgaaggcagcactcaagcagctggatcgtccggagaagggtctgtctgagcgcgagcag
ctggagcacacgcgtcaatgcctgatcaaaataggagatcacatcaccgagtgtctgaga
gaatacaccaaccccgaactgatcaaacagtggaggaaaaatctgtggatatttgtttcg
aaattcactgaatttgatgcaaggaaactgcataaactgtataaacacgccatcaagaaa
agacaagaaaatgctcagccgaatttcttgttgtgtgtaaatttgtgttcttttgttttt
gaatgtgttgtgttgttattggagttgttgaggggttaaaggagtagaggcaggtagaga
tcggacagacatcactcatctcgctaccatgagcacagcaaagatcggcatgctggagac
tcatacagaaagagctccgatcccaggaagagaccctactcctccttcagcaacggcaaa
gaccaccgagagcgagagagagagcagtacagagagagaggagagcgacaggacagcaga
tactacagcgacagcaagcacaggaagctggacgagcaccgctccagcagagagcaccga
tcagaaagcaactccaaggacaggactcacgccgaacaccgcctccactctgagcaccgc
tccgcctccgactacacgcatcccaaatcgtcccgggactaccgctaccatgcagactgg
cagatggagcaccggccgcgctctccgctgggccaccgctcgcccttcgagtactcgtct
gaccacagaagcacacccgaacaggtctggagcggccgcaagacataa
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integrated database retrieval system
