Cyprinus carpio (common carp): 109097340
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Entry
109097340 CDS
T05134
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
ccar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109097340
04148 Efferocytosis
109097340
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109097340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109097340
Membrane trafficking [BR:
ccar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109097340
Hops complex
109097340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
TPR_Vps41
Beta-prop_WDR3_1st
zf-C3HC4_2
Beta-prop_WDR36-Utp21_1st
zf-RING_2
zf-rbx1
zf_RING_Vps8_fungal
zf-C3HC4
zf-C3H2C3
TPR_GEMI5
WD40_Prp19
zf-ANAPC11
zf-RING_UBOX
Beta-prop_EML_2
zf-RING_5
zf-RING_Vps41
zf_RING_Vps8
Glyco_transf_10
DLP_helical
Paralemmin
Motif
Other DBs
NCBI-GeneID:
109097340
NCBI-ProteinID:
XP_042621147
Ensembl:
ENSCCRG00000003530
UniProt:
A0A9Q9YJ33
LinkDB
All DBs
Position
A10:complement(11506649..11513189)
Genome browser
AA seq
927 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDPSENGKNFQLPVGIAACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHNILVSVGQDEPGINPLVKVWNLDKKDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLSLHEGNCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRIELDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLTHWHRGYLLLITHNNKSPSKSEFGSRQTSPTEKHILTIYD
LDNKFIAYSAAFDDVIDVLAEWGSFYVLTRDRTLYMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAIKVLRQA
GYHSHAVFLAEKHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKILMHHV
PESSTILLKRLCTDYQPNKNSTDRDSLDRPAENKANPEEFIPVFANNPRELRAFLEHMIE
VDPFSPEGVYDTLLELRLQDWAHEQDPGKKKVLQEAALSLLRSDHTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDSEVCLWEQALGYFARKEENCK
AYISEVLQHIDENNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERETQQIEEDERKIRQ
YREETAHLRTEIQELKTCAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCLESFAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFHRQLKCSNDGFSVIADYFGRGVFNKLTLITD
PPGGKSGAGNLEAEFNRDLLINTKRNV
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcttacagtggagacgatttgtgtttttcgataaagaaacggtgaaagat
ccgagcgaaaatgggaaaaatttccaactaccggtgggaatagcggcgtgtgattcaggt
cgaggacacattgtgcttggagatatggatgggcagatttggtttttgacccgctccctg
cagctgtccagctttcaggcttataaactgcgcgtgacacacctgtaccagctgaaacaa
cacaacatcctggtgtctgtgggtcaggacgagcctggcatcaatcctctggtgaaggtg
tggaaccttgataagaaggacagcggcagtcctctgtgcacccggatattccctgccata
cctggaaacaaacccactgaagtgtcttgtctcagtgtacatgaaaaccttaatttcatg
gctataggttttacagatggcagtgttgtgctgacgaagggtgacatcaccagagacaga
cacagtaaaactctcagcctccatgagggcaactgtccaatcacaggcctggctttccga
caggccggcaaagtcacacacctgtttgtcgccactctagaaaaagtgcagtgttacaca
ttatcagtgaaggagtaccctcgtatagaactggacacgcacggctgcgccctccgctgc
tcggcactcacagacccctcgcaggactcgcagttcatagtggctggagatgactgtgtg
tatttgtaccagcctgatgagagagggccctgttttgctttcgatgggcacaagcttctt
actcactggcacagaggctatctgctgctgatcacacacaataacaagtcacccagcaaa
tctgaatttggtagcagacagacatcccctacagaaaaacacatcttgaccatttatgac
ctggacaacaagtttatcgcttacagtgcggcgtttgatgatgtcattgatgttctggca
gaatggggctctttttatgtcctaacaagagacagaacactgtatatgctgcaagaaaaa
gacacacagaccaagctagagatgctgtttaagaagaacctgtttgtgatggccattaac
ttggctaaaagtcaacatctggacaatgatggattgtctgagatattcagacagtatgga
gaccatctctacgtcaaaggggatcacgatggagctattcagcagtatattcgcaccatt
gggaagcttgagccctcatatgtaatccgtaaatttttggatgcacagaggatacataac
ttgacagcgtacctacaggccctccacaggcagtcgctggccaacgctgaccacactact
ctactactcaactgttacaccaaactgaaggacagctccaagctggaagagtttataaag
agcaatgaaagtgaggtgcattttgatgttgaaattgcgatcaaggtcttacgtcaggct
ggttatcacagtcatgccgtttttctggcagagaaacacatgcaccatgaatggtatcta
aagatccagctagaggatttgaagaattatcaggaggctttacgctacataggacggtta
ccatttgatcaggcagagagtaatatgaagcgttatggtaaaattctaatgcaccatgta
cctgagagttccaccatcctcttaaaacgcctctgcactgactatcaacctaacaaaaac
tcaaccgacagggacagtctggacaggcctgcggaaaacaaggccaatccagaagagttc
atcccagtctttgccaataacccacgagagctgcgagcgttcctggaacacatgatcgag
gtggatccgttctcacctgagggagtttatgacactctgctagagctcagactgcaggac
tgggcacatgagcaggacccagggaagaagaaagtcctgcaggaggcagcactgtccctg
ctgagaagtgaccacactgtgtttgacaaagccctggtgctctgtcagatgcacaacttc
aaggaaggagtgctgtatctgtatgaaaagggcaaactgtaccagcagatcatgcattac
cacatgcagaatgaggagtacgggaaagtcgtggaggcctgtaaacgctacggggacagt
gaggtgtgtttgtgggaacaggctctgggttactttgcacgcaaagaagaaaactgcaag
gcctacattagtgaagtcctgcagcacattgatgaaaataacttgatgcctccacttctg
gtggtgcagactttggctcataattccacagcatcgctgtcagtcataaaagactacctg
ataaataaactggagcgggagacccagcagattgaggaagatgaaaggaagattcgacag
tatagagaggagacagcccatcttcgcactgagatacaggaacttaaaacgtgtgcaaag
atcttccagaagaccaagtgcagcatgtgcaacagcccactagagttgccatctgtgcac
ttcctgtgtggccactctttccatcagcactgcctagagagctttgcagagagtgaggcc
gagtgccccacttgcacccctgagaacaggaaagtgatggacatgttgcgtgcgcaagat
cagaaacgagatctgcacgaccatttccacagacagctgaaatgctctaatgacggcttc
tcagtcatcgctgactattttggccgtggagtgtttaacaaactcactctgataacggat
cctcctggaggaaagagtggagctgggaatctggaggctgaattcaacagagatctgctc
attaacaccaagaggaatgtttga
DBGET
integrated database retrieval system
