Cyprinus carpio (common carp): 109097451
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Entry
109097451 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109097451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109097451
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109097451
mRNA degradation factors
5'-3' decay
Decapping complex
109097451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
109097451
NCBI-ProteinID:
XP_042618661
Ensembl:
ENSCCRG00000002516
UniProt:
A0A9Q9YEC3
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All DBs
Position
A1:complement(32108162..32122941)
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AA seq
768 aa
AA seq
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MFHFQSFEDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDEQVRDGV
HGAGDASSVDLPLAGGNAHSSALPQPSSSSRLYPDTDERGGGDLAESLTRLILGSDPAIA
GVGTARSDRSHLPPMLSGQAPQPSALAGQSSLLLSYQQQQQLMRRGPAPLPQINSHSIWE
NSMGFSPVSSGLVTQKEDKTLMSIIKEVGLPNRPPALSREEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMSQVHNHQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIANS
PLSHPPFPAGVGPVLSQIQRAQLLNSQIGQFPRGPAPPLLQGGVGGFRPFFGPSGPRMGP
HGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRRNRDPYSNLMTQRE
KEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHT
YRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTSSNDEEKREKQVWNKRRQILYTVEKMYSL
LLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKG
KRLISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTVVVQSMSSTSLT
DLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTX
LLKVPSSALSSPLFTLTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgttccatttccagtcttttgaggatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcgatgat
gattggcaggaggagcatgcccgcctcgcagagcttgatgagcaggtacgagacggagtg
catggagcgggcgacgcctcctccgttgacctccctctcgctggcggcaatgcccactct
tcagccctccctcaaccctcctcttcctcccggctttaccctgacacagatgaacggggt
gggggtgacctggcggaatcactgactcggctcatcttgggttcggatcctgctattgct
ggagtgggcactgccaggtcggacagatctcaccttcctccgatgctgtccggtcaggct
cctcagccctcggcgttagctggacagtcttctctgctgctaagctaccaacaacagcag
cagctcatgcgcagagggccggctcctcttccacagataaactctcacagtatttgggaa
aacagtatgggcttcagtcctgttagttctggactagtcactcaaaaagaggacaaaacg
cttatgtcgattatcaaagaggtggggcttcctaatcggcctcctgcactcagcagagaa
gaagggcgagatttgtccgaaagggttccgcctcctcgctcctcctcacctgtgattgga
agtccacctgtaagggctgtacctattggaacacctccaaaacagcccatgagtcaagtc
cacaatcaccagaataatcacccttcagccattcacgtgagagcctctgtgccactgcgc
tacccacctcccttccctgagcgtctgtcccccaacaacctcctcagcatcgctaactca
ccgttgtctcatcctccgttccctgctggtgttggtcctgttctgtctcagatacagaga
gcccaactgctcaactctcagattggtcagttcccacgtggtccagctcccccattatta
cagggaggtgtcgggggtttcaggccattctttgggccgtctggtcctagaatgggtccc
catggaccacctcttggccacgcacccatccgacacaacaccacccacctccacccgcag
caccgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtcggagga
agaggtgttggagacaggagaaacagagatccttacagcaatctgatgacacaaagagag
aaggaatgggtagcaagaatccaaatgatgcaacttcaaagcaccgatccgtatctggat
gactactattaccagaattattatgagaagatggagaagcgtcaggagcgggaccgagac
aacagaaaggagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacc
tatcggccagtgcagtttgctggctcattaggaaaactcactgtctccagtgtgaacaat
ccaaggaaaatgattgatgccgtggtgaccactagcagtaatgatgaggaaaaaagagaa
aagcaagtgtggaacaaaagacgacaaatcctttacactgtggagaagatgtacagttta
ctattagaagtgcaagactttgagaagaagttcttgcagacccctgagcaccaaagagat
gccctgctagaacagcataaaacccacacgctgcagctctacaactctctccgagaaaaa
gagtgggacgaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgtaagggg
aaacgcctcatctccagactcctccccttcctgccacagccccaggctgctgctgttgtc
atgggaatagccaggaaccttccagctctggccaagaaagacaaacaagaccaggtactg
tgttggttggtagagccagtgactgtagtagtccagtccatgtcgagtacctcccttact
gatcttcttcaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaataag
tttggcgtgacgttgctctatctgattctaagtgaaggagagaggatgcagagctccgat
cccaactgtcagctcatggacgataaccgctggactgagttggtgttctctgtgacgnnc
cttttgaaggtcccgtcctctgcgctttcatcaccgctgtttactcttactcctccaaac
ctagtgtcattgttctctcgatatgtggaccggcagagactcgagctcttgcaggagaag
ctacagatcacagccctgtccaggtag
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